RNA id: TU1761744


Basic Information

Item Value
RNA id TU1761744
length 221
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1539325
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32544311 ~ 32544531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttaaagtaatgatggactttcgtttctgtttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaaaagggctatcttctgtatatcacccctaccttgtcacaacacaactgattaactcaaacgcattaagaaggaaagaaatgaacaaggcacacctgttaattgaaatgcattccaggtgactacctcatgaagctggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761730 lncRNA upstream 11237 32532821 ~ 32533074 (+) True G1539311
TU1761729 lncRNA upstream 13014 32531090 ~ 32531297 (+) True G1539310
TU1761699 lncRNA upstream 38084 32506009 ~ 32506227 (+) True G1539280
TU1761372 lncRNA upstream 293894 32250187 ~ 32250417 (+) True G1538974
TU1760742 lncRNA upstream 463585 32080249 ~ 32080726 (+) True G1538382
TU1761748 lncRNA downstream 3417 32547948 ~ 32548190 (+) True G1539329
TU1761766 lncRNA downstream 16985 32561516 ~ 32561810 (+) True G1539347
TU1761777 lncRNA downstream 29559 32574090 ~ 32659643 (+) True LOC118941135
TU1761863 lncRNA downstream 149796 32694327 ~ 32694635 (+) True G1539438
TU1762013 lncRNA downstream 364551 32909082 ~ 32909627 (+) True G1539583
XM_036952514.1 mRNA upstream 182435 32352055 ~ 32361876 (+) True LOC110496028
XM_021571655.2 mRNA upstream 182437 32352055 ~ 32361874 (+) False LOC110496028
XM_021571654.2 mRNA upstream 192512 32341709 ~ 32351799 (+) False LOC110496027
XR_005037433.1 mRNA downstream 29425 32573956 ~ 32659559 (+) False LOC118941135
XM_036952519.1 mRNA downstream 175818 32720349 ~ 32959058 (+) False LOC110496032
XM_036952520.1 mRNA downstream 175818 32720349 ~ 32959058 (+) False LOC110496032
XM_021571664.2 mRNA downstream 450003 32994534 ~ 33050381 (+) False LOC110496033
XM_021571663.2 mRNA downstream 484760 33029291 ~ 33050381 (+) True LOC110496033
TU1760548 other upstream 790120 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 963991 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 972072 31568891 ~ 31572239 (+) True LOC110496006
TU1759494 other upstream 1716265 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 2246965 30297131 ~ 30297346 (+) True G1536720
TU1762072 other downstream 475697 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 514459 33058990 ~ 33059857 (+) True G1539671
TU1762993 other downstream 911029 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 944806 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 990745 33535276 ~ 33537564 (+) True LOC110496043

Expression Profile