RNA id: TU1762071


Basic Information

Item Value
RNA id TU1762071
length 224
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1539640
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33018926 ~ 33019149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcagaatggtcaggcaggcgggttcagagtcaaggcaggcaagggtcaaaaccaggaggactagcaaaagagataAGAAAAAGCACGAGCActgaaaaacacgctggttgacttgacaagacaaGATGAACTAGCAACAGACCAACAGGGAACACCCAAATAAATACCCAGGGACAAATTGGGAAaacgggtgacacctggaggtggggggagacaatcacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1762065 lncRNA upstream 11949 33006777 ~ 33006977 (+) True G1539634
TU1762052 lncRNA upstream 48116 32970460 ~ 32970810 (+) True G1539622
TU1761854 lncRNA upstream 53957 32961950 ~ 32964969 (+) False LOC110496032
TU1761851 lncRNA upstream 53957 32963130 ~ 32964969 (+) False LOC110496032
TU1761852 lncRNA upstream 54095 32963130 ~ 32964831 (+) True LOC110496032
TU1762073 lncRNA downstream 1526 33020675 ~ 33020951 (+) True G1539642
TU1762074 lncRNA downstream 2091 33021240 ~ 33021461 (+) True G1539643
TU1762082 lncRNA downstream 9236 33028385 ~ 33028676 (+) True G1539651
TU1762055 lncRNA downstream 31285 33050434 ~ 33051933 (+) True G1539625
TU1762100 lncRNA downstream 35277 33054426 ~ 33054847 (+) True G1539669
XM_036952519.1 mRNA upstream 59868 32720349 ~ 32959058 (+) False LOC110496032
XM_036952520.1 mRNA upstream 59868 32720349 ~ 32959058 (+) False LOC110496032
XR_005037433.1 mRNA upstream 359367 32573956 ~ 32659559 (+) False LOC118941135
XM_036952514.1 mRNA upstream 657050 32352055 ~ 32361876 (+) True LOC110496028
XM_021571655.2 mRNA upstream 657052 32352055 ~ 32361874 (+) False LOC110496028
XM_021571663.2 mRNA downstream 10142 33029291 ~ 33050381 (+) True LOC110496033
XM_021571666.2 mRNA downstream 67452 33086601 ~ 33172114 (+) False LOC110496034
XM_021571665.2 mRNA downstream 67713 33086862 ~ 33172114 (+) True LOC110496034
XM_021571667.2 mRNA downstream 333646 33352795 ~ 33356691 (+) False LOC110496035
XM_021571673.2 mRNA downstream 361441 33380590 ~ 33389754 (+) True exosc7
TU1760548 other upstream 1264735 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 1438606 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 1446687 31568891 ~ 31572239 (+) True LOC110496006
TU1759494 other upstream 2190880 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 2721580 30297131 ~ 30297346 (+) True G1536720
TU1762072 other downstream 1079 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 39841 33058990 ~ 33059857 (+) True G1539671
TU1762993 other downstream 436411 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 470188 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 516127 33535276 ~ 33537564 (+) True LOC110496043

Expression Profile