RNA id: TU1762925


Basic Information

Item Value
RNA id TU1762925
length 3704
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1540456
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33352824 ~ 33356662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTAATAATGCATTTTTGTTTATAATACATTGCCTTTCCTTATCCCCCTAGTAGGGCCCCAGTGCTGCACTAATCTGGAGCACACATCTTAACAGGTCAGTCATATGCACCTCCCAAACTAATATCTACAGTTTATAACATGATAtccatatctacagtataatggttACAACAAACATGTCCCAGTCAGGTGCTGGCTATAAATCAAACATTTCATGAAACCACTGCACTAATGCATTGATTTCTCTTGCCCTTAGTAACAGTGGCTTCACAGGTAAATGTTTATCCTCAGTTTAGACTGAAGAACACAGGAGAAATGTCAGCACCAATGTCTCCCATCCTGATTCAATAGCATAGATAGTCACATTGCAAGGGGAGTAGattacattacatacaaaacCTGCAGTCTGTAATGTACTGCAACTGGATGGAGAACCGATTTCATAGTGTGCATTCCTCTGCATTTATACAGACATATCATTGTCTAATAGATACAGTCAGAATACAGGTAGCTACCGTTGGTTGTTGCATGCATATGATacgtataaaaaaaaaacagcaaagtGTGATCGTATAGTAAAGTTGTCAAGTCAAACTCCAGTCTATGGTAACGTTGTCAGTATTACGCAAAAAGCCCATTTCCACAATAGCACATCACAGTGTTAAGGAATATCAGGGAAGTACACCGTTGGAGGACAAGCATGCTAGTAATAAACACTACTTTCAGTAGTTGGGTTAGAAACCCCACAGCAACATTTGACCTTTTGGGAGTCTTGGAAGATGCAGAGGGAGGGACTGTGCTACCGGATGCCTCTCTTACCCCAAGGATAACCTCAAACTGATTTTAATTGCATTGGAAAACTAGGATAGACATTGTTGATGAGACAGGCCTACAGCTGGAAGACAAACAGCTGGTGACACTCAATTAAAAGGCCAGACATTGGAGTAACTGTTGTTTAGACACCCCATTAGGTCAGCATTAAATGAGTCTCTTCTGCCAAAGGAAATAAGGGATAGTTCACTCCAAAATTTTAGTTGAGGTCAGATGTGGGCTAATGTCAAGAGGTCCAGACTGTCTGCTGTGTAGATCCAGCTCTGTGCCTCATCTCCAAATGAATTGGAAAGACAGGCACCCTCTAAAGAAGATGAAATTAGACTGTGCCTATCCTTTCCATTCATTGGAGTTTGTCTCATCTCGACATTAGGCCACTTTTGAGGTTTGAATATGTCTGACAAACTTAGATTTTTGAGTGAACTAGACAGTATCACTTTACAGGCAGTTGAGGTCACTACGATTTATTTTGGGCCACTTAGCAGTTTGACTTCACAATGCATTGACAGAGCCACTGCTGTGGTTAGTGGGTAAAAGGCAGGATCAACATATTTGGGTACTTTGGTTTGACTTAATTGGGTTTAGACCTTGTGAGGAACTTTCTATTAGACATTTGCTATAAAGGCAGGCAAGGCCAAACCTCCTCAGAATTCACAAAACATGTCAAAACTCTAAGGGTCAAGTCCTCAAGatatgaggctatatacatgatTCCATTCACACATCACCTTGAACATGCAATAATGCAATGTTGGTGTGGAAGTTTACAGTGAGTGTCATCTTAGGATATGTGAGCAAAACAGCTTTTGTGTTCTCAAGTATTGATGTCATGCACACATTGCTGATGATGTCAAAGtgtttaaaacaaaacaaaaatcactATATATTCCTTACATGGTATGTTTTGACAGTGCTTTACCTTCCAAAGTTGCCATTCACCCAAGAAATGCTATTGTTTGTCACAGATAGTAGGCTATACGTTGCATTACTGGTTTCTTTCTATATCAGTTAATTAGTTGTGCCTTCCGACAGGTTGTCATTCATCCTTCCTGGCTCGGTCGTTGGGGGCTGCCCTCTGAAGTACCAGGAGGCCAGAGAACGTGAGGGAGATTCCCACCCACCACAATGCAATCTGGGCCTCCCCGAAGATAAGCTgccccaaaaaggcctgtggcaAAATACAGGGAAACATGTACTTACGGAAGATATGAAGTTGGAAGCGGTGGTGGTCACAGTGGTtcgggtggaggaggaagagtacCTGAGAGCCTTAGCGAGGAATGTCCACATCACAGCATTACAAGTGAAGAGCAGCCCCCCACAAAGCAGCCTCAGGGGGATGTGTAgctgaaacaaacacacaaacacaatagaTACCTTTCGGTGTTTGCAAACATTGCTCCACGACGTGCACAAGTTGGTGGGAGAACAAGGGGGAACAAGGGTAAAAAAAAGCCTCTATTTACATGTTGCTTATAAGTGCATTGCGcactacttttggattataatcATATTTTAAGGCTAGTATGtatgtcctgcttaatataatgtttgtgtcatcatcgcaaatcaactgcattgtacttttttttaaaacagtcTATTTCAATGAGCCTTAGAATTCTAGCTAACAACGGCTGAatccaaaatagttattttgcaAAGATAACCAAATATAATCTTTGTGACCATTCAAGCAAGAGTCTAAACATCATTGTAAGCATAGGAGAACCCCAAAAAGTGACGTTGTTTATAAGTAATAAAAACGTAAATCTAGGCTATGTTGAACGGGCATAGATGGTGATGGCTTTTTACTGCTGCCAATAGTAGCACGCATTTGTGCGTGACGTCAGTGTGTCGTGTACTGGAATGTGGTCTATATGAATGAAAACAATGTTATGTGGCAATTGAGTCACATCAAATAGTTGAGCTCCATTTCAGGGATTTGGAGCCTATTTTAGTTATGTGTCTTGATATGTAAATGTATGTAAAATAAATATCTGacggctttataaataaataatatagatGATAACTCAAACGTAAAATCATAACACCACATTATGAAGGTCGTTTCAAGCAGCCCAATTACAATTTGGTATTGACATTGAATGGACAATTGCCCATATGTTAAACTAGGATCACATTCGGCCACTAGAATAAAATGATACTCAACATAAGCAAATATCTTGCTTTAACACAAAAATAAACGATGTAATACTGCACTACTGTAGGTCGCACGAGCTGCAATGTCGTTCAAGCACGCGGGTACGACAGAAGCTTGATACACAGCATCGCCTGTCCAGCTGAGCGAACCTCCGATGATGCTGCCGATGGTGCTGGTGCTGATGCTGAGCGCACGAGCTGGAATCCGGAGCCTTAAACTCATCACTGGAAAACCCCAATTTCCCTTCTCGCGGACGTATTGCTATGCTAACACATTGACATTTACATTATTCAAAGCCACCCGAATCCCATCGCGTTAATAATTCAGGCACTTAAACGGGGGCGATTCCTCACCCAGTCACACGCGGTAGTTTCATCCGGTTGTCTAAATTTCCGCTGCTCTCCCCATGTTCGTAGCCCCGTTTCACATACACCTTTAAGGTAATCGGCTCCAAGTGACAGCTTTGCAGATGAAGATGCGACAGCCCCGAGAAACCCCGCCAGGAGCGCATAGAAAACGCCGGGGAACATGTTGACAACCAAGGCACATATTTTTCTAATCCATCACATTCCTACGGCGGTATTGAGTTGAATGTGTGAGTAAAATCTAATCTACAGGCTACTTCCTAACAATAACCGCCCGGAGATAGCCACACCAATCAAAATACTTGCTCAGCGGGTAGGTGCAGAAAGTGGTTCGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1762779 lncRNA downstream 180731 33170529 ~ 33172093 (-) True G1540320
TU1762774 lncRNA downstream 197731 33154844 ~ 33155093 (-) True G1540316
TU1762712 lncRNA downstream 270174 33082428 ~ 33082650 (-) True G1540254
TU1762697 lncRNA downstream 289178 33063416 ~ 33063646 (-) True G1540239
TU1762696 lncRNA downstream 293195 33059244 ~ 33059629 (-) True G1540238
TU1762950 lncRNA upstream 24003 33380665 ~ 33385589 (-) True G1540466
TU1762957 lncRNA upstream 34327 33390989 ~ 33391236 (-) True G1540472
TU1762961 lncRNA upstream 35239 33391901 ~ 33392302 (-) True G1540475
TU1762985 lncRNA upstream 77142 33433804 ~ 33434235 (-) True G1540499
TU1762986 lncRNA upstream 78128 33434790 ~ 33435085 (-) True G1540500
XM_036952521.1 mRNA downstream 43493 33172426 ~ 33309331 (-) False LOC110496796
XR_005037434.1 mRNA downstream 43493 33172426 ~ 33309331 (-) True LOC110496796
NM_001281418.2 mRNA downstream 898441 32450001 ~ 32454383 (-) True eomesa
XM_036952518.1 mRNA downstream 935001 32365592 ~ 32417823 (-) True LOC110496030
XM_021571657.2 mRNA downstream 935003 32365592 ~ 32417821 (-) False LOC110496030
XM_021571669.2 mRNA upstream 10025 33366687 ~ 33379507 (-) False LOC110496036
XM_021571670.2 mRNA upstream 10025 33366687 ~ 33379508 (-) False LOC110496036
XM_021571671.2 mRNA upstream 10025 33366687 ~ 33379508 (-) False LOC110496036
XM_021571672.2 mRNA upstream 10025 33366687 ~ 33379508 (-) True LOC110496036
XM_021571674.2 mRNA upstream 35751 33392413 ~ 33414958 (-) True cdcp1b
TU1762604 other downstream 416255 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 790704 32561726 ~ 32562120 (-) True G1539348
TU1761118 other downstream 1294039 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 1637643 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 1660153 31685752 ~ 31692671 (-) True LOC100136047
TU1762958 other upstream 34677 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 245812 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 247486 33604148 ~ 33610893 (-) True LOC110496048
TU1763572 other upstream 300979 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 805265 34161927 ~ 34162458 (-) True G1541318

Expression Profile