RNA id: TU1763009


Basic Information

Item Value
RNA id TU1763009
length 311
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G1540520
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33461522 ~ 33461832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTTGTTTACCCGTGTGCCAACGCTTTGCCTGTCTTGTTACCTGTTTGTTCCTGATTAAATGTTGACTCcacgtacctgcttctcatctccggcGTCGGTCCTTACAGAATGCTGAAGCCACTATACGAAACTTTGGGGAGTAATGGCGACGTTGATGGAACTGGGGGTGCCTAAGCCAGCTCGTCGGGCTGTCACGCCCTAGCTGGCTTGAGAGGTTCTTGCCCCAGTTGGCTCGGAAGGCGCCCATCCCACGTCGGGCCTCAGCTAGATCGTCAGGTTTTTAGGcccagccggctcgtcaggctgcT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763008 lncRNA upstream 90 33461232 ~ 33461432 (+) True G1540519
TU1762991 lncRNA upstream 2565 33456752 ~ 33458957 (+) True LOC110496797
TU1762338 lncRNA upstream 63256 33394954 ~ 33398266 (+) True G1539890
TU1762333 lncRNA upstream 69679 33391585 ~ 33391843 (+) True G1539887
TU1762332 lncRNA upstream 70302 33390998 ~ 33391220 (+) True G1539886
TU1763011 lncRNA downstream 612 33462444 ~ 33462735 (+) True G1540522
TU1763030 lncRNA downstream 12625 33474457 ~ 33474722 (+) True G1540540
TU1763032 lncRNA downstream 13742 33475574 ~ 33475785 (+) True G1540542
TU1763033 lncRNA downstream 14477 33476309 ~ 33476819 (+) True G1540543
TU1763035 lncRNA downstream 15478 33477310 ~ 33477599 (+) True G1540545
XM_036952524.1 mRNA upstream 2558 33456922 ~ 33458964 (+) False LOC110496797
XM_021571677.2 mRNA upstream 11421 33433366 ~ 33450101 (+) True LOC110496040
XM_021571675.2 mRNA upstream 34970 33420834 ~ 33426552 (+) False nrm
XM_036952523.1 mRNA upstream 34970 33421720 ~ 33426552 (+) True nrm
XM_021571673.2 mRNA upstream 71768 33380590 ~ 33389754 (+) True exosc7
XM_021571678.2 mRNA downstream 18264 33480096 ~ 33489024 (+) True LOC110496041
XM_021571682.2 mRNA downstream 47004 33508836 ~ 33512426 (+) True LOC100136630
XR_005037569.1 mRNA downstream 48380 33510212 ~ 33510343 (+) True LOC118941240
XR_005037564.1 mRNA downstream 48970 33510802 ~ 33510928 (+) True LOC118941235
XR_005037570.1 mRNA downstream 49998 33511830 ~ 33511959 (+) True LOC118941241
TU1762993 other upstream 3098 33455560 ~ 33458424 (+) False LOC110496797
TU1762103 other upstream 401665 33058990 ~ 33059857 (+) True G1539671
TU1762072 other upstream 440978 33020228 ~ 33020544 (+) True G1539641
TU1760548 other upstream 1707331 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 1881202 31578167 ~ 31580320 (+) True LOC110496008
TU1763041 other downstream 27505 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 73444 33535276 ~ 33537564 (+) True LOC110496043
TU1763554 other downstream 616886 34078718 ~ 34079074 (+) True G1540996
TU1763847 other downstream 666509 34128341 ~ 34129659 (+) False LOC110496058
TU1764399 other downstream 1421682 34883514 ~ 34898411 (+) False mbpa

Expression Profile