RNA id: TU1763130


Basic Information

Item Value
RNA id TU1763130
length 3889
lncRNA type read_through
GC content 0.42
exon number 3
gene id G1540627
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33508819 ~ 33513984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaattatggtgatgagcatttggtcacctacaaacaagatttctggctctcacagacctgtaacttctttaggaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcaatataaaagacacctgtccacaacctcaaacagtcacactcaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaattgTAGTTCTGCACCAGGctaggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagtcatacaagaccactgataatctccctccatctgggactccacgcaagatctcaccccgtgggggcaaaattatcacaagaacggtgagcaaaaagccagtacatgtccaggcccgtctaaagtttgctcgagagcatttggatgatccagaagattgggagaatgtcatctgaccatgacaccaaaatataacttttttggtaaaaaaaaaaaaaaacttgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacaactgatccgtgtaaaggaaagaatggggccatgtatcatgagattttgagtgaacctcctaccatcagcaagggtattgaagatgaaacgtggttgggtctttcagcatgacaatgattccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcaaccccatagaaaatcttttggagggagttgaaagtctgtgttgcccagcagtagccccaaaacatcactgctctagaggagagctgcatggaggaatgggccaaaataccagcaagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctcttatatactctttgttggcaatgacaaactattgagataaacttttgttattgaccaaatacttattttccaccataattggcaaattttgaaaaaatcctaatgtgattttctggatttctctcattttgtctgtcatagtccaagtgtacctatgatgaaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttgccccactgtatatttagtgCAGTAACTCAAATAAACTGGCATTGTTTGTCACAGTACTTAGGTGTTGTTGCGAAGTCCTCATTAGCGATAAAGCACTGACATTTACCTTTTACTTCAGTAGTCCAATCAATAGTATGCACCAAAGATGCTGCATTAATTTATATTCAAGTAATTTAGTAGATTATCAAATAAATGAATTTAAAACCTTTGACTCATTCCTCAACTGTCCTGTATTCAGGCCTTTATAAGTGTTACTAAACATCATACCACATTCAACTTTTTAAAAAAACAATGGAAGTCCTCAAATGTATTTcctcatttaattttttttagaaAGGAACAATTTTAACGGTTGGACTTGGCGACCCTCTCCAACTCGTCCTTCTTCTTGATGGCGTAGGAGTTAGAAGAACCCtgacaaaacacaaacacactggtcAACCCCGAAGAATTTGACATGAACACTGGTGAACAAACCCTCCCAACATAACAGTAGACGTGAAAAATCTGATTAACTTGTTCAAAACCAAATCTGTATGGTACTGAAACACAATTGAGACTACACCTTCAACAAAAAGTCTCACCTTGGCTGCATTGATCAGCTCATCGGCAAGGCACTCTGCGATAGTCTTGATGTTCCTGAAAGCAGCTTCTCTTGCTCCAGTGCAAAGTAGCCAGATCGCCTGGTTGACTCTACGCAGAGGGGACACATCCACAGCTTGCCTCCTAACGGTACCAGCACGACCAATACGGGTGGAGTCCTCACGAGGTCCGCTGTTTATGATGGCATTGACCAGCACCTGCAGGGGGTTCTCCCCGGTCAGCAAGTGGATGATCTCGAAGGCGTGCTTCACAATGCGACAGGTCATCAGCTTCTTGCCGTTGTTGCGGCCATGCATCATCATAGAGTTGGTGAGACGTTCCACAATGGGGCACTGGGCCTTGCGGAAACGCTTGGCAGCATAACGACCTCCAGAGTGTGGTAGGTACTTAGCGTACTTCTCCTTCACAGCAATGTAATCCTGAGTTGAAGGAAAAAGCATCATCAATACTAGTTCCCTTCCCAATAACTTACATTTCAATGTCCAGGTTAACAGGGAATACATCGATGTTCATGTTTCTGAGCTGGTGATTGACTGGGCCACATGAGACTACAGCCAATGAATATGCAAAGTAGTTTACTCTGCGAGCACTCTAGCACACCAAGACAATGAGGGTTGTAAAGGCGTGACTCTAGCCTCgcttacacacacaaaaaaaacaattatgTTTTATAGTGCCTAGTCACAAATCAAACATTGAAATGCCCTACCTGCAGGGAGATGTCATTGATCTGAACATCGTCTGTGCTCCATTTCCCAAAGAGCTTGATTTCTGGCGTTTCAGCCACTGCAGGGGCAGTCTCCCACGACTCTGAAGTCACTGATGAAAAACAGAAGATTTAGTCAGGTAACATTGATGGATTTAATTACGAGAGTCAAGGTACCACAATGTCTGACCCCAGTTCCATGGCAAAGGCCTTGTAATAATGGTATCCCACACTAATCAATGATATTacaaaattgtaattacttcgacACTATGCCCCATTTATTGCCTCCCTCCCATATCCTACCttatttgtacacactgtatatagactttattattcactgtatgtttgtttattccatgtgtaactctgttgtgtgtcgaactgctttgctttatcttgaccaggtcgcagttgtaaatgagatgttctcaactagtctacccggttaaataaaggtgaaatcaaaaacAGTAAAAATTACCACATCACGATATTGATACTACCACATTACGGCTCAACTAGTTAGCATAATGCTAGGTGACATGAGAAAATGATTCATGATAAAGCCATCAACATCAGGAAGGAATGGCTGCCACTGTCAGTAACACACGAAGAGCTAGCTAACCTGCTAGCCAACGTTATCCATTATACAGTCAACGTTAGTGATAGCAACGTGGGCTGGGCTACACACGGACAGCACAAATATATTGGTGTAAGTAGTTAAATTATATTAAAAAGTCGGGATAAAAACTTAAAGGCAATGTGAATGAGAGCAGACACACGACAGTAGGCCCAAAAGGCTAAAGTCAGACAGAGTCTACTAGCGAACGAGTTATATGGCTAATGTCATTATGAGCAAAACATGAGATAAACATGTGTTTAACACCAAACTGAACATCTTGCATAGCAACAATGTTCCGAATGGTCCAGGGAGGACGCTAAATAGGAAGCTAACTAGCAGTGTCGCACGTGTAAGCATGAAGTTAATCTGCCCCGGCTGAAGGCCGGTAAAAACACTCGGGTGATTTAAAAACGACTTCGGACTATAAACGGATTTACTTCAGACTCAAAGTCAAACAAGCAATGTTACACGTACGATAGTTGGACATTGTGCGTTTTCATGCAATTTTGGCCTTGAAAATTGTAACATTTTTCCACTCACTTGTGTCTGCCGTTCTGCACCACACTTCTCAAAGCCGGAAAAGGGCCTGTTCAGGGCGCATCAAACAGATATACCGGGAGGCGGAAATGAGGTAACTGGATTGCACTGCTTTTATGGAGTTGTAGTTCAATGGCAGAAATCCCATCTCcaaaatgtacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763160 lncRNA downstream 208 33508353 ~ 33508611 (-) True G1540648
TU1763150 lncRNA downstream 10520 33498069 ~ 33498299 (-) True G1540640
TU1763147 lncRNA downstream 14017 33494599 ~ 33494802 (-) True G1540637
TU1763146 lncRNA downstream 14291 33494123 ~ 33494528 (-) True G1540636
TU1763036 lncRNA downstream 30513 33478029 ~ 33478306 (-) True G1540546
TU1763168 lncRNA upstream 23986 33537970 ~ 33538194 (-) True G1540656
TU1763231 lncRNA upstream 106452 33620436 ~ 33621322 (-) True G1540713
TU1763139 lncRNA upstream 109563 33623547 ~ 33623787 (-) True G1540633
TU1763235 lncRNA upstream 112995 33626979 ~ 33627240 (-) True G1540717
TU1763566 lncRNA upstream 142741 33656725 ~ 33656944 (-) True G1541007
XM_021571674.2 mRNA downstream 93861 33392413 ~ 33414958 (-) True cdcp1b
XM_021571670.2 mRNA downstream 129311 33366687 ~ 33379508 (-) False LOC110496036
XM_021571671.2 mRNA downstream 129311 33366687 ~ 33379508 (-) False LOC110496036
XM_021571672.2 mRNA downstream 129311 33366687 ~ 33379508 (-) True LOC110496036
XM_021571669.2 mRNA downstream 129312 33366687 ~ 33379507 (-) False LOC110496036
XM_021571681.2 mRNA upstream 12157 33526141 ~ 33533677 (-) False LOC110496042
XM_021571680.2 mRNA upstream 12157 33526141 ~ 33533687 (-) True LOC110496042
XM_021571686.2 mRNA upstream 46858 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA upstream 58030 33572014 ~ 33573707 (-) True LOC110496045
XM_036952525.1 mRNA upstream 65812 33579796 ~ 33581971 (-) True LOC110496046
TU1762958 other downstream 117067 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 572250 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 946699 32561726 ~ 32562120 (-) True G1539348
TU1761118 other downstream 1450034 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 1793638 31714506 ~ 31715181 (-) True G1538595
TU1763210 other upstream 88490 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 90164 33604148 ~ 33610893 (-) True LOC110496048
TU1763572 other upstream 143657 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 647943 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1221390 34735374 ~ 34739639 (-) True atp9b

Expression Profile