RNA id: TU1763080


Basic Information

Item Value
RNA id TU1763080
length 3015
lncRNA type read_through
GC content 0.40
exon number 2
gene id G1540590
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33571633 ~ 33582747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attaaaatgtctgaatataAAAGTGTAGAGGACATTATTGTGTCaacaatgaaaaacagcaccttttttccccattttgtgaCACAACTTAATTCCTTTATTATTCAGAATAATATTACAGTATTTGTAtgtgtgttcagtagagtagtgtAAAGGCACTTTAAGTTGTTGCGTATCATAGTTGCAAGTATTATTCAGTTGATAAATGTTATTAAAGTAGATGAGGAGTTTAAGACAAATTCTGAGCTCACTGTGCCAAACCTAGTTAATAGAGGATGGAGACAAAGTAGTCTGAAACCTGTTTAAACAGTGTGAAACAGTGTGAACAGAAGTGTAACAGGTTTAAACAACACTGTGAACAGAAGTCATTGTTTGTCCAGTCTAAACACCCCAGGCCATCAGGGCGGCGCTGAGTGCCACAGTCACAGAGACCTGGACGGAGCTGGCCCCGTTACACAGGTCTGTCTGGCAGCATGAGGAGCTGCTCGTGACACCAGCACTAAAGATGGTTGCAGTGATGGTCTTGCCACACAGGTCTGAGTCCAGACAACCACGGGTGTGGAGTGTCAGAAACTCAGTGGAATTGAATTCTAGATGGAATGAGATTtagaacaaaacattaggaaaacatgctctttccatgacacagactgacctggtgaatccaggtgaaggctatgatcccttattcaggtcatttgttaaatccacttcaatccgtatagatgaaggggaggaatcAATTGCACtgatacaattgagacatggattgcgtatgtgtgccatttatagagggcaagacaaaagatttaactGCCTTTTGacagggtatgatagtaggtgccaggcatgctagtttgagtgtgtcaagaaatgcaacgctgctggatttttcatgctcaacagtttcctgtgtgtatcaagaatgatctaccacccaaaggacatccagccaacttgacacaattgtggaaagcattagagtcaacatgggccagcatccctttggaaagctttcgacaccttatagagtccataaccggaagaattgaggctgtcctgagggcaaaagtgggtgcaactcaatattatgaaggtgtccctaatgttttgtacactcagtgattGCTAATTCATTGCATATTCACAAGTCTTTGTGTACAGGTTTCCTTACTTGCTTCTCCGGTGAAGCAGTTGAGAGTGGAGTTGTCACACACCATGTTTTTGGGAAAGAAACATGTCCCAAAGAGCCCCACACTGCACTGCTTACAGGTCAAGGACTGGGCTGTGGAACATGGAGGAGAGGCAAGATAAGTGGATGAATCATGTGCAgttcaacacaatacaatacgaCACAAACAATGATACAGTAGGTAGATAGGAGCATGAACGTCATGAGTGGCATCAGGTGGAAGAATGAAAGAAGACAGATTGCGTCATACCTATAACTCACCCAGCAATTCacaataaaaagctgaaatgtacaTGTTTAGACATTCACAGTATGTATTTGTatcaggtatatatatatatatatgaaaatgAATGGTTGATTGTATACTGTGTAAATTGATGTTGTACACAGTGCAGCCCTGAAACTAGAAGTGTGTTTAGTGGCTTCTCTTATCTACAAGTTTGCCAGTTAAATGTGGTTCAGTCATTACAATAGAGTCAATATCCTCTTATTAGTGAAGGTACTGCTACCACAGGAGACTAAACTTGTCATACAGTATAAGAATGGCCTCGGTACCCATGGAAAATAGGCATCATTGTTACTGGTAATCAGACTAAAACAATAGAAAGCACTCTCAGGTTCTTCAAACTCCTTTGTTGTGTACAGAATATGTGACATGCATCCATTGGATGTCTACCATTATATCATATTACAATTTTATAGCCTTAGAAAATAAAAGCACCTAGTACAGAATTTGCGAAAAACCTGAACTAATCAAATCACAACCTATTACTGTATCTGTCTTTGAATATTGCCATAGGAACAGAAGAAGCTGATATGACTTACCCACTGCTATGAAGACCACCAGGACAGTCAGCACAATCAAAATTGTACTCTTCATCTTCTTGTAGGAGGCTAGTGTTTGTTGTTCTCAATAGGAGGGCTATTCGCAGAATCTATTCACTTTACAGAGACGGGAAAGAACACTAATCAAATGAATGGGGAAACATCCAGTTTCCTGCTAAAGGTGTGATGCAGATGGAGACTAGAATGAAGTATAGCAGGTTTTATCCAGCACAAGTCTGGAATGCAGACAGTATCTTATCATTTACATCACATTGAAATGCTCAGTCAAAAAGTTAAGTTGACGTCTTGATTTTATTATTTGTTCCAGCCTTTCACACATACAAAAATACACCATGTAGTGTCTCGTAGTAGCAAATATTTTCGAAAGTGTATTCAGTATGATTATTTATTGCACATAGAATACATAGAAAGGTTATCTCTATAAAAgagcaacatgctcaatggggAAACTCACTACGCATGATAATGGTAATTAATAGTGACATGGTTGAGAAGTTATTCCATTAAAAAGTGAATAGTGACTCTGACGTGTTGCAAATGTGAATGCAGTAAAGTACATACATTGATTAGCTGTTCATTCCGATGCTGTAGTAGGATGTTGAGTATTCTAGGCCCTAGAAGTAAAACCAGTTTGAATTGGTACTTGGAACTAAAGCTGAGAGCGAAACTAGCCTGAATAAACATTGTAGTCTTTTCCAGAATAAACCATTTTCAATACATTGTGTATCTAAGAACTACAACCGACAATAACATCATTCAATGGAAACCTATGGAGGAGGTGTCCTTATTGTGAATAGTTTGTCGAGGCGAAGGCCAGATGGCCACCAGGGTGGCACCAGGGGCCACGGTGAGTTAGTTGGATGGCTCTGGCAGCCTGCCACTTTGCTCGGGTTGGTGCTGCAGCAGGTTTGTGAGATGGTGTAGCCGGCTCCTAGATGCTAGCAGTGAATGTGGTGTTACAGGAAGCTGTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763076 lncRNA upstream 13533 33554786 ~ 33558100 (+) True G1540586
TU1763058 lncRNA upstream 46580 33524813 ~ 33525053 (+) True G1540568
TU1763057 lncRNA upstream 47091 33524323 ~ 33524542 (+) True G1540567
TU1763043 lncRNA upstream 54418 33514208 ~ 33517215 (+) True G1540553
TU1763053 lncRNA upstream 68150 33503265 ~ 33503483 (+) True G1540563
TU1763103 lncRNA downstream 19171 33601918 ~ 33608105 (+) False G1540606
TU1763100 lncRNA downstream 22207 33604954 ~ 33608105 (+) False G1540606
TU1763102 lncRNA downstream 22207 33604954 ~ 33608105 (+) False G1540606
TU1763106 lncRNA downstream 22207 33604954 ~ 33608105 (+) True G1540606
TU1763121 lncRNA downstream 38643 33621390 ~ 33621658 (+) True G1540621
XM_021571683.2 mRNA upstream 34064 33535229 ~ 33537569 (+) False LOC110496043
XM_021571682.2 mRNA upstream 59207 33508836 ~ 33512426 (+) True LOC100136630
XM_036952532.1 mRNA downstream 355935 33938682 ~ 34059960 (+) True LOC110496055
XM_021571705.2 mRNA downstream 497361 34080108 ~ 34088560 (+) True LOC110496056
XM_021571707.2 mRNA downstream 509500 34092247 ~ 34116282 (+) True ints8
XM_036951387.1 mRNA downstream 544445 34127192 ~ 34133734 (+) False LOC110496058
XM_021571710.2 mRNA downstream 678565 34261312 ~ 34265470 (+) True trhrb
TU1763040 other upstream 34069 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 80512 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 113209 33455560 ~ 33458424 (+) False LOC110496797
TU1762103 other upstream 511776 33058990 ~ 33059857 (+) True G1539671
TU1762072 other upstream 551089 33020228 ~ 33020544 (+) True G1539641
TU1763554 other downstream 495971 34078718 ~ 34079074 (+) True G1540996
TU1763847 other downstream 545594 34128341 ~ 34129659 (+) False LOC110496058
TU1764399 other downstream 1300767 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 1300767 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 1699856 35282603 ~ 35283706 (+) True G1541989

Expression Profile