RNA id: TU1763235


Basic Information

Item Value
RNA id TU1763235
length 262
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G1540717
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33626979 ~ 33627240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgatttgaaaaaataAATTTGATTAATAGGAAGAAAAACATTTACTGAGGCCACTGGTGTGACATCTCTAGTTAttttatatttacagtgccttcggaaagtattcagaccccttgactttccacattttgttatgttacaaccttattctaaaatgaattaaatgatttttccccctcatcaatctaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763139 lncRNA downstream 3192 33623547 ~ 33623787 (-) True G1540633
TU1763231 lncRNA downstream 5657 33620436 ~ 33621322 (-) True G1540713
TU1763168 lncRNA downstream 88785 33537970 ~ 33538194 (-) True G1540656
TU1763130 lncRNA downstream 112995 33508819 ~ 33513984 (-) False G1540627
TU1763132 lncRNA downstream 112995 33508819 ~ 33513984 (-) True G1540627
TU1763566 lncRNA upstream 29485 33656725 ~ 33656944 (-) True G1541007
TU1763660 lncRNA upstream 226647 33853887 ~ 33867357 (-) True lrp12
TU1763684 lncRNA upstream 248010 33875250 ~ 33939003 (-) True G1541115
TU1763778 lncRNA upstream 404257 34031497 ~ 34033219 (-) True G1541207
TU1763798 lncRNA upstream 442727 34069967 ~ 34070184 (-) True G1541225
XM_021571689.2 mRNA downstream 16031 33606949 ~ 33610948 (-) False LOC110496048
XM_036952525.1 mRNA downstream 45008 33579796 ~ 33581971 (-) True LOC110496046
XM_021571686.2 mRNA downstream 53113 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA downstream 53272 33572014 ~ 33573707 (-) True LOC110496045
XM_021571680.2 mRNA downstream 93292 33526141 ~ 33533687 (-) True LOC110496042
XR_002469622.2 mRNA upstream 15686 33642926 ~ 33652838 (-) True LOC110496928
XM_036952526.1 mRNA upstream 30458 33657698 ~ 33674304 (-) False LOC110496049
XM_036952529.1 mRNA upstream 65152 33692392 ~ 33695690 (-) False LOC110496050
XM_021571695.2 mRNA upstream 65152 33692392 ~ 33695704 (-) False LOC110496050
XM_036952530.1 mRNA upstream 65152 33692392 ~ 33695869 (-) False LOC110496050
TU1763210 other downstream 16086 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 16086 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 235227 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 690410 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 1064859 32561726 ~ 32562120 (-) True G1539348
TU1763572 other upstream 30401 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 534687 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1108134 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1510397 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1548066 35175306 ~ 35180028 (-) True LOC110496081

Expression Profile