RNA id: TU1763816


Basic Information

Item Value
RNA id TU1763816
length 262
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1541243
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34120716 ~ 34120977 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacaatttcgtataaatcggaaattagctaggttgaatttggttatttgaattacctttttcacatgctttttaaaagagaggttggaatcaagtatgatgccaaggtacttaaaatcggataccacctggagcttctcccctgacacatagacatctggctcagtagcatctgttgccctctttgtgaagaacatgcaaacagtttttttcacattgagatgcaaacacaagtcactgagccactttgtaacctggacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763552 lncRNA upstream 45135 34075128 ~ 34075581 (+) True G1540994
TU1763533 lncRNA upstream 75036 34043133 ~ 34045680 (+) True G1540976
TU1763524 lncRNA upstream 89508 34030868 ~ 34031208 (+) True G1540967
TU1763440 lncRNA upstream 212088 33908231 ~ 33908628 (+) True G1540886
TU1763403 lncRNA upstream 257564 33862239 ~ 33863152 (+) True G1540851
TU1763841 lncRNA downstream 4693 34125670 ~ 34125991 (+) True G1541268
TU1763843 lncRNA downstream 5249 34126226 ~ 34126432 (+) True G1541270
TU1763845 lncRNA downstream 6282 34127259 ~ 34127844 (+) False LOC110496058
TU1763850 lncRNA downstream 9201 34130178 ~ 34130681 (+) True LOC110496058
TU1763854 lncRNA downstream 13145 34134122 ~ 34134806 (+) True G1541278
XM_021571707.2 mRNA upstream 4434 34092247 ~ 34116282 (+) True ints8
XM_021571705.2 mRNA upstream 32156 34080108 ~ 34088560 (+) True LOC110496056
XM_036952532.1 mRNA upstream 60756 33938682 ~ 34059960 (+) True LOC110496055
XM_021571683.2 mRNA upstream 583147 33535229 ~ 33537569 (+) False LOC110496043
XR_005037570.1 mRNA upstream 608757 33511830 ~ 33511959 (+) True LOC118941241
XM_036951387.1 mRNA downstream 6215 34127192 ~ 34133734 (+) False LOC110496058
XM_021571710.2 mRNA downstream 140335 34261312 ~ 34265470 (+) True trhrb
XM_021571711.2 mRNA downstream 176207 34297184 ~ 34300652 (+) False LOC110496061
XM_021571712.2 mRNA downstream 255119 34376096 ~ 34574937 (+) False pleca
XM_021571713.2 mRNA downstream 255119 34376096 ~ 34574937 (+) False pleca
TU1763554 other upstream 41642 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 583152 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 629595 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 662292 33455560 ~ 33458424 (+) False LOC110496797
TU1762103 other upstream 1060859 33058990 ~ 33059857 (+) True G1539671
TU1763847 other downstream 7364 34128341 ~ 34129659 (+) False LOC110496058
TU1764399 other downstream 762537 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 762537 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 1161626 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 1254267 35375244 ~ 35386463 (+) False G1542037

Expression Profile