RNA id: TU1763897


Basic Information

Item Value
RNA id TU1763897
length 532
RNA type TUCP
GC content 0.51
exon number 1
gene id G1541318
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34161927 ~ 34162458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgagctaaagggtagagctgccgctttcaaggagcgggactctaacccggaagcttataagaaatcccgctatgccctccgacgaaccatcaaacaggcaaagcatcaatacaggactaagatcgaatcgtagtacaccggctccgatgctcatcggatgtggcagggcttgcaaactattacagaccacaaagggaagcacagccgagagctgcccagtgacacgagcctaccagacgagctaaataactcctatgctcgcttcgaggcaagtaacactgaaacatgcatgatagcatcagctgttccggttGACTGTGTGACTATGCTCTCCTCAGCCGATgggagtaagacctttaaacaggtaaatattcacaaggccgctgggccagatggattaccaggacgtgtactccgagcatgcgctgaccaactggcaagtgtcttcactgacattttcaacctctccctgtctgagacTGTAATACCAAccatgtttcaagtagaccaccatagtccctgtgcccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763891 lncRNA downstream 1963 34159717 ~ 34159964 (-) True G1541313
TU1763885 lncRNA downstream 6474 34151912 ~ 34155453 (-) False G1541308
TU1763886 lncRNA downstream 6474 34151912 ~ 34155453 (-) True G1541308
TU1763871 lncRNA downstream 18991 34142597 ~ 34142936 (-) True G1541295
TU1763859 lncRNA downstream 25479 34136241 ~ 34136448 (-) True G1541283
TU1763913 lncRNA upstream 8984 34171442 ~ 34171758 (-) True G1541334
TU1763916 lncRNA upstream 11053 34173511 ~ 34173735 (-) True G1541337
TU1765272 lncRNA upstream 137503 34299961 ~ 34300868 (-) True G1542514
TU1765302 lncRNA upstream 196097 34358555 ~ 34363965 (-) True G1542543
TU1765325 lncRNA upstream 240106 34402564 ~ 34402790 (-) True G1542566
XM_021571703.2 mRNA downstream 294496 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 348626 33783934 ~ 33813301 (-) True vps72a
XM_021571700.2 mRNA downstream 349519 33783934 ~ 33812408 (-) False vps72a
XM_021571698.2 mRNA downstream 415142 33697163 ~ 33746785 (-) True LOC110496051
XM_021571697.2 mRNA downstream 415154 33697163 ~ 33746773 (-) False LOC110496051
XM_021571709.2 mRNA upstream 16575 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA upstream 16575 34179033 ~ 34183891 (-) True gdf6b
LOC118940975 mRNA upstream 72930 34235388 ~ 34237566 (-) True LOC118940975
XM_021571737.2 mRNA upstream 432773 34595231 ~ 34610505 (-) False fbxl6
XM_021571738.2 mRNA upstream 432782 34595240 ~ 34610507 (-) False fbxl6
TU1763572 other downstream 487696 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 551034 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 551034 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 770175 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 1225358 32899578 ~ 32936569 (-) True G1540148
TU1765523 other upstream 572916 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 975179 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1012848 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1184437 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 1290160 35452618 ~ 35504157 (-) True G1543128

Expression Profile