RNA id: TU1765272


Basic Information

Item Value
RNA id TU1765272
length 908
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1542514
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34299961 ~ 34300868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacattggatcattcagagatcctcactgaacttctggagagagtttgctgtactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaggtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgtaatgttATCTCTGGCTGGAGCTGCCTACTACTTTATAcatgcaatcaatcaatcaataagaTATCAATAAGATACATTAGGTGCTATATTCACACTTCTTCCTTGTCTCAGTAAAAACATCTCCTTTGTCACTTCTTCCCTGGTCTTCCTTTACTCAGCCTGTCGTTGCTATGCAACAAACACTGGGTAATGAGAATCATTATCGAATAAGCTATTAACTAAGGTTATGAATCCGAAAGGAATTTTTAAATTGCAGGAATGACCTCACTGCCAACTCATTAAGCAAAAATAAATTTTGAACACTTTCCCTTCACATGCTATGACAGTTGATGATAACTGGATGCCACATCGGATAAGATAGATTGGCTATGTCTCAAAATTTCACCCTGACACtacttcctatatagtgcactacttttgaccagggcccatagtgaatatggtgccatttgagcCACAGCCATTACCACCGCATGTGTCTTCACTTCCTGATCCCCAGGGGCCACAACTGCCACAAACTAGCTCTTGACCCCACGTGACCCCTGCAGCACTCCAATTCCATTTCCTGCTGCCAGCTGGCCTGACGGATTACTCAGTGACTCTGTTCAGGGGAGGGGgggcttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763916 lncRNA downstream 126226 34173511 ~ 34173735 (-) True G1541337
TU1763913 lncRNA downstream 128203 34171442 ~ 34171758 (-) True G1541334
TU1763891 lncRNA downstream 139997 34159717 ~ 34159964 (-) True G1541313
TU1763885 lncRNA downstream 144508 34151912 ~ 34155453 (-) False G1541308
TU1763886 lncRNA downstream 144508 34151912 ~ 34155453 (-) True G1541308
TU1765302 lncRNA upstream 57687 34358555 ~ 34363965 (-) True G1542543
TU1765325 lncRNA upstream 101696 34402564 ~ 34402790 (-) True G1542566
TU1765326 lncRNA upstream 102178 34403046 ~ 34403265 (-) True G1542567
TU1765333 lncRNA upstream 111303 34412171 ~ 34412443 (-) True G1542574
TU1765342 lncRNA upstream 125080 34425948 ~ 34426169 (-) True G1542583
LOC118940975 mRNA downstream 62395 34235388 ~ 34237566 (-) True LOC118940975
XM_021571709.2 mRNA downstream 116070 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA downstream 116070 34179033 ~ 34183891 (-) True gdf6b
XM_021571703.2 mRNA downstream 432530 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 486660 33783934 ~ 33813301 (-) True vps72a
XM_021571737.2 mRNA upstream 294363 34595231 ~ 34610505 (-) False fbxl6
XM_021571738.2 mRNA upstream 294372 34595240 ~ 34610507 (-) False fbxl6
XM_036952539.1 mRNA upstream 294372 34595240 ~ 34610583 (-) False fbxl6
XM_021571736.2 mRNA upstream 294372 34595240 ~ 34619367 (-) True fbxl6
XM_021571742.2 mRNA upstream 344248 34645116 ~ 34704821 (-) False nfatc1
TU1763897 other downstream 137503 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 625730 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 689068 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 689068 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 908209 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 434506 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 836769 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 874438 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1046027 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 1151750 35452618 ~ 35504157 (-) True G1543128

Expression Profile