RNA id: TU1765344


Basic Information

Item Value
RNA id TU1765344
length 221
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1542585
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34427176 ~ 34427396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttatggaatggtctgcctacccatgtgagagacacagactcggtctcaacctttaagtctttactgaagtctcatctcttcagtgggtcatatgattgagtgtagtctggtccccaggagtgtgaaggtgaacggaaaggctctggagcaacctTGCTGCCCTTGcccctgtctctgcctggcccattcccctctctccactgggattctctgcctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765343 lncRNA downstream 464 34426495 ~ 34426712 (-) True G1542584
TU1765342 lncRNA downstream 1007 34425948 ~ 34426169 (-) True G1542583
TU1765333 lncRNA downstream 14733 34412171 ~ 34412443 (-) True G1542574
TU1765326 lncRNA downstream 23911 34403046 ~ 34403265 (-) True G1542567
TU1765325 lncRNA downstream 24386 34402564 ~ 34402790 (-) True G1542566
TU1765346 lncRNA upstream 1630 34429026 ~ 34470929 (-) True G1542587
TU1765391 lncRNA upstream 147357 34574753 ~ 34579122 (-) True G1542628
TU1765462 lncRNA upstream 158434 34585830 ~ 34586069 (-) True G1542698
TU1765465 lncRNA upstream 161371 34588767 ~ 34589016 (-) True G1542701
TU1765466 lncRNA upstream 161690 34589086 ~ 34589447 (-) True G1542702
LOC118940975 mRNA downstream 189610 34235388 ~ 34237566 (-) True LOC118940975
XM_021571709.2 mRNA downstream 243285 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA downstream 243285 34179033 ~ 34183891 (-) True gdf6b
XM_021571703.2 mRNA downstream 559745 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 613875 33783934 ~ 33813301 (-) True vps72a
XM_021571737.2 mRNA upstream 167835 34595231 ~ 34610505 (-) False fbxl6
XM_021571738.2 mRNA upstream 167844 34595240 ~ 34610507 (-) False fbxl6
XM_036952539.1 mRNA upstream 167844 34595240 ~ 34610583 (-) False fbxl6
XM_021571736.2 mRNA upstream 167844 34595240 ~ 34619367 (-) True fbxl6
XM_021571742.2 mRNA upstream 217720 34645116 ~ 34704821 (-) False nfatc1
TU1763897 other downstream 264718 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 752945 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 816283 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 816283 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1035424 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 307978 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 710241 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 747910 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 919499 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 1025222 35452618 ~ 35504157 (-) True G1543128

Expression Profile