RNA id: TU1765465


Basic Information

Item Value
RNA id TU1765465
length 250
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G1542701
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34588767 ~ 34589016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaatacctatgtgagaatgctgttcatcgactacagctcggcattcaacaccatagtaccctccaagctcgtcatcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtactggacttcctgacgggccacccccaggtggtgagggtaggcaacaacatctactcccgctgatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcacccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765462 lncRNA downstream 2698 34585830 ~ 34586069 (-) True G1542698
TU1765391 lncRNA downstream 9645 34574753 ~ 34579122 (-) True G1542628
TU1765346 lncRNA downstream 117838 34429026 ~ 34470929 (-) True G1542587
TU1765344 lncRNA downstream 161371 34427176 ~ 34427396 (-) True G1542585
TU1765343 lncRNA downstream 162055 34426495 ~ 34426712 (-) True G1542584
TU1765466 lncRNA upstream 70 34589086 ~ 34589447 (-) True G1542702
TU1765470 lncRNA upstream 2363 34591379 ~ 34591585 (-) True G1542706
TU1765478 lncRNA upstream 35968 34624984 ~ 34625603 (-) True G1542714
TU1765486 lncRNA upstream 44321 34633337 ~ 34634208 (-) True G1542717
TU1765487 lncRNA upstream 45460 34634476 ~ 34634904 (-) True G1542718
LOC118940975 mRNA downstream 351201 34235388 ~ 34237566 (-) True LOC118940975
XM_021571709.2 mRNA downstream 404876 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA downstream 404876 34179033 ~ 34183891 (-) True gdf6b
XM_021571703.2 mRNA downstream 721336 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 775466 33783934 ~ 33813301 (-) True vps72a
XM_021571737.2 mRNA upstream 6215 34595231 ~ 34610505 (-) False fbxl6
XM_021571738.2 mRNA upstream 6224 34595240 ~ 34610507 (-) False fbxl6
XM_036952539.1 mRNA upstream 6224 34595240 ~ 34610583 (-) False fbxl6
XM_021571736.2 mRNA upstream 6224 34595240 ~ 34619367 (-) True fbxl6
XM_021571742.2 mRNA upstream 56100 34645116 ~ 34704821 (-) False nfatc1
TU1763897 other downstream 426309 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 914536 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 977874 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 977874 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1197015 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 146358 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 548621 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 586290 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 757879 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 863602 35452618 ~ 35504157 (-) True G1543128

Expression Profile