RNA id: TU1765488


Basic Information

Item Value
RNA id TU1765488
length 1060
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G1542719
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34635809 ~ 34636868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGGGAAAAACATGGCAATGAAGCAGGCTAGAGGGTTGGACACCGCAGCCATGGTGGCTGATAAGTGGTAGGCACTGTTTCCATAGGGCAGACAAGAGTAGGACTGCACTGAGGGAAGCACAACGTTAGTCAGTCCGTTGACCCAGGCCAGGATGAAGAACATATACAGCACCTGTATCCGGCTGTACGTCCCGGTCCCAAAGCAGCTTTTGGGCTTGATATCAGACTGTTTGATCATGGTCTTCTGCTCTGTGGGGTTCATCTGAGCTGCCTCGCCTTTCTCCAGGACCCCGTTGGGGTAGCGGGCATTTGGGCGTTCCCGGGCCACGGCAGGGTGGTAGTTCAGAAGGATGAAGGCTCCCAGGCACACCAACATCATGGCACTGAGGAAGAAGAAGAACACCCCAGCTGAGAAGTTGGCCGGCTGGTAGTGAGCCTGAAGTTCGTAGCTAAGACTGACTGAGCCAGTGTCATTTATCATCCGAGTGCAGTTGTTACAGTGGACCACCCCCACCCCCTGGATCAGGGCTACCAGGGCGGGTAGCAGGCCACTGACACCCTCCCCTACAAAGTAGGTGGTGAGGTACTGAGGCTTCAGACGCATCATAAAGGGCAGGAAGGTGACAGAGGAGGTGCAGTCCACAGTGGAGAGGAAGAaagtaaggaggaggagggccacgCTGCGAGGGACGCCCACCACCAGCAGCGTCTCCTTCCAGAAGAAGGCCAGGAGAAAGCTGGCCACCATGCCCAGGGAGATGATCACATAGATAACCACTGTCTCGTTTAGCGCCCCGGGGCGGAAGCGGTGCATGAGGGTGATGAACAGGGGCCCCACGTTGGCCATCTGGATGAGGACGGATAGGTAGGATGGCAGGTACCAACCCTCTGGGATCTGGGGCACGATGAGAGGCAGCTCTACCCATAGTCCGTTGATAGACACCCAGGAGCCCATGCCAAACAGGCAGGCCAATATATGGATGAAAAGTGACATTGTGAATCTGGGTACTGAACACTGGTGCGCTCAGAAGTGGATTCTAGAATGAGATAGAAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765487 lncRNA downstream 905 34634476 ~ 34634904 (-) True G1542718
TU1765486 lncRNA downstream 1601 34633337 ~ 34634208 (-) True G1542717
TU1765478 lncRNA downstream 10206 34624984 ~ 34625603 (-) True G1542714
TU1765470 lncRNA downstream 44224 34591379 ~ 34591585 (-) True G1542706
TU1765466 lncRNA downstream 46362 34589086 ~ 34589447 (-) True G1542702
TU1765490 lncRNA upstream 4945 34641813 ~ 34642229 (-) True G1542721
TU1765492 lncRNA upstream 8273 34645141 ~ 34659158 (-) True nfatc1
TU1765499 lncRNA upstream 28374 34665242 ~ 34665496 (-) True G1542729
TU1765501 lncRNA upstream 31898 34668766 ~ 34668987 (-) True G1542731
TU1765524 lncRNA upstream 106755 34743623 ~ 34744146 (-) True G1542753
XM_021571736.2 mRNA downstream 16442 34595240 ~ 34619367 (-) True fbxl6
XM_036952539.1 mRNA downstream 25226 34595240 ~ 34610583 (-) False fbxl6
XM_021571738.2 mRNA downstream 25302 34595240 ~ 34610507 (-) False fbxl6
XM_021571737.2 mRNA downstream 25304 34595231 ~ 34610505 (-) False fbxl6
LOC118940975 mRNA downstream 398243 34235388 ~ 34237566 (-) True LOC118940975
XM_021571742.2 mRNA upstream 8248 34645116 ~ 34704821 (-) False nfatc1
XM_021571743.2 mRNA upstream 100959 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA upstream 100959 34737827 ~ 34794929 (-) False atp9b
XM_036952540.1 mRNA upstream 158526 34795394 ~ 34808500 (-) True sall3b
XM_021571750.2 mRNA upstream 270255 34907123 ~ 34923956 (-) False zbtb22a
TU1763897 other downstream 473351 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 961578 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1024916 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 1024916 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1244057 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 98506 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 500769 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 538438 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 710027 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 815750 35452618 ~ 35504157 (-) True G1543128

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00021926 True 1580 mRNA 0.43 4 CM030130.1 39420257 ~ 39423376 (-)