RNA id: TU1765499


Basic Information

Item Value
RNA id TU1765499
length 255
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1542729
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34665242 ~ 34665496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcatcatagcgcttgatggtttttgcgaaggcacttgaagaaactttcaaaggtctGGAAATTTcggcattgactgaccttcatgtcttaaagtaatgatggactgtcatttctctttgctaatttgagctgttcttgccataatatggacttggtctttctgtataccacccctcccttgtcacaacacaactgattggctcaaaacgtattaagaaggaaagaaattccataaattaacttttaacaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765492 lncRNA downstream 6084 34645141 ~ 34659158 (-) True nfatc1
TU1765490 lncRNA downstream 23013 34641813 ~ 34642229 (-) True G1542721
TU1765488 lncRNA downstream 28374 34635809 ~ 34636868 (-) True G1542719
TU1765487 lncRNA downstream 30338 34634476 ~ 34634904 (-) True G1542718
TU1765486 lncRNA downstream 31034 34633337 ~ 34634208 (-) True G1542717
TU1765501 lncRNA upstream 3270 34668766 ~ 34668987 (-) True G1542731
TU1765524 lncRNA upstream 78127 34743623 ~ 34744146 (-) True G1542753
TU1765639 lncRNA upstream 233812 34899308 ~ 34899566 (-) True G1542857
TU1765646 lncRNA upstream 234651 34900147 ~ 34900382 (-) True G1542864
TU1765647 lncRNA upstream 234905 34900401 ~ 34900639 (-) True G1542865
XM_021571736.2 mRNA downstream 45875 34595240 ~ 34619367 (-) True fbxl6
XM_036952539.1 mRNA downstream 54659 34595240 ~ 34610583 (-) False fbxl6
XM_021571738.2 mRNA downstream 54735 34595240 ~ 34610507 (-) False fbxl6
XM_021571737.2 mRNA downstream 54737 34595231 ~ 34610505 (-) False fbxl6
LOC118940975 mRNA downstream 427676 34235388 ~ 34237566 (-) True LOC118940975
XM_021571743.2 mRNA upstream 72331 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA upstream 72331 34737827 ~ 34794929 (-) False atp9b
XM_036952540.1 mRNA upstream 129898 34795394 ~ 34808500 (-) True sall3b
XM_021571750.2 mRNA upstream 241627 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 269112 34934608 ~ 34943891 (-) False LOC110496076
TU1763897 other downstream 502784 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 991011 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1054349 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 1054349 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1273490 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 69878 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 472141 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 509810 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 681399 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 787122 35452618 ~ 35504157 (-) True G1543128

Expression Profile