RNA id: TU1764295


Basic Information

Item Value
RNA id TU1764295
length 2986
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1541694
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34735386 ~ 34738435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttattgcTCATTAATCAATAGTAATACCATAAATTGCAGTCTATGACATAGAATGCAAGTCCTCAACAGATTAAACctgtataacaccatacaaacagaGCATAAGTATCAACAGAAAACACATCGTTAGACAATTGGGATCAAGttaacttaaaaaatatatatttgtattacaATGACAGCCATGTCCATACTTCACTCATAAATAAACACAACAGCCCAGTCTGTCTCATACAGCGTTGCCGTGTACAGTATGGTTGCCACAATTCTATTCAGACTATTCAGGACATACAGGAATGATTTACCTGAGTTCAACTCAAATGGGATACAAAAACATGGCAACCTCTTCCACAGAGAAATATACAACACTTACTGTACAGACAAAGACAATCAGGAAAATAGATCAGTGTAAGCATCGTGATACATATATTCAATTGTGTTTGGACTAGGCATTTATATGtaactaaacacacactcacatggcAAGAATGATAAAACTCATTCCCCCAAACCGCTGTCAGGTTTCGTCTTTGCATCCATAGCAGGGTGAAGTCAGCTTCATCTCAAGCCCAGAAGACATGATCAGAGGTTAATAAAGATACTGTCATATTAGTAATATTCTGTGGTTGTTTAAGATTGAGAAAGAACAGTGGTCATTGTGAAATATTGTCAGAAGTGAGTGGTTACAGCAAGGTATATATATCCCTTGTGGTCAAGCTGCTGGCCCAGGAGATCTTTCAAATAAGAAACAGAATACTCTAGCTAGTCTATCTAATCCTGTGATTGACAAATCGGAGCTATGAAAGCCGTTATCCAAACGCAACAATCAAACAATGAGGCGCAAACGCAAACTGGCATGTCCAGCAACCAGGGCTGGCAGCCAATGACAAATACACATCCCGATAGCGTAATACACTGTGTTCAAGGCCAGGATGCAAGGAATACAATTGCCTAAATCAAATTAACTATGGAGTGCTGGTTTCTACTCTTAGGAATTCAAGAAGATATTTCATATGATATTCAGCATCTGGAAATGTAAAGGACTTATTGTACAAAGAGAGAACATCCAAAGCCAGTTGGGTGTTTTTCCCAGAACAAATAATTTGCACTTTTATTTGCAAAATTTAGCTTATTTTGGTTAATGTATGTTTTCCCTATGTACACTACCGGTTaaaaggtttagaacacctactcattcaacggttgttctttatttttactattttctacattgtagaataatagtgaagacatcaaaactatgaaatgacacacatggaatcatctagtaaccaaaaaagtgttaaacaaatccaaatatattttatatttgagattcttagcattctctcaaccagcttcatgaggtggtcacctggaatgcatttcaataaacaggtgtgtccttcttaatgcgtttgagccaatcagttgtgctgtgacaaggtaggggggtttacagaagatagccctatttggtaaaaaacaaAGTCCATatgatggcaagaacagctcaaatgagaCTAGAGAaaatacagtccatcattactttaagacatgaaggtctgtcaACGCGGAAAATGTCAGAGTTagttctgctgcagaggataagttccttaTAATCACCAGTCTCagaaactgcagcccaaataaaagcttcacagagttcaagtaacagacatctcaacggtgtgggtgaacggatgatctccgcatgtgtatttcccaccatgacgcacggaggaggaggtgtgatggtgctttactggtgatactgtccgtgatttatttagaattcaaggcacatctaaccagcatggctaccacagcattctgcagtgatacgccatcccatctggtttgcgcttagtgccactatcatttgtttttcaacaggacaatgacccaacacacctccaaggcTGTGTAAGCACTATTttgccaagaaggagagtgatgaagtgctgcatcagatgacctggcaatcccccgacctcaaccaaatgaagatggtttgggatgagtcggacagcagagtgaaggaaaagcagccaacaagtgctcagcatgtgggaactccaagactgttggaacagcattccaggtgaagctggttgagagaatgccaaaagtgtgcaaatctgtcatcaaggcaaagggtggctatttgaagaatatcaaatagaGAAATAtatttgttactacatgattccacgtgttatttcatagttttgatgtcttcactattattctacaatgttgaaaaatgtaaaagaaagaaaaaccccgACCGCTATTGTAAGTACAGTTAAGCGTCAGGGTACAGTAGTAAAATGGTGCACGCGTTAAGTTCGTAGGAATCAAAGTTGTAAATCAAAAATTAAACCATCATACTGGCATCTCTACTCAGCACAGAGATGAATAAAGTTGAATAAAACACTTTTTAATGCAGAACTACATATACAAAAAGTTCAACGCGGAAACCATTGTCATCGagttataaaaaatgtaaagacaCTTGAAGCAATTGGGTTGGATGTGCAGAAGGCAAATTGACCCGAGCCTTCCCGTCCAGTGCCTCAAAGGGTTATTTGTTCTGTTTTTACCCCTTCCCTGTCCCTTTTTAGCATTTGTGTGGCGCTGTCTTTACAAGTATTACCACATTTCAGTGACATGAATCCATACAATACTCTACTCATGTTGTTGCTTCTAGTGACCTCTTTAGGTTCCCTGTCTGTCAATCACTGTGGACCAGTTCAAAAAGCGCTGAAAAGAAAGGTTGGAATCATAGAGAGCATGAGACAGATAATTAGGGGAGTTGTGTGAGCAGGATAGAGCTTAAAATGGCTCATGAGGACAGCTTGGAGTAGCTGGGTGGTGAGAACTTGCGCTTCAGGTATTTGAtgatatagagagggagacagctgaCGACGGTGATCACTGACACCTTCCAAAGGAAGGCTGGTGTCGTGATGAAGCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764267 lncRNA upstream 64889 34670262 ~ 34670497 (+) True G1541666
TU1764245 lncRNA upstream 92098 34643058 ~ 34643288 (+) True G1541644
TU1764219 lncRNA upstream 94765 34639057 ~ 34640621 (+) True LOC110496067
TU1764220 lncRNA upstream 101047 34633724 ~ 34634339 (+) False LOC110496067
TU1764244 lncRNA upstream 108412 34626477 ~ 34626974 (+) True G1541643
TU1764298 lncRNA downstream 3040 34741475 ~ 34743381 (+) True G1541696
TU1764317 lncRNA downstream 10501 34748936 ~ 34750497 (+) True G1541713
TU1764328 lncRNA downstream 40486 34778921 ~ 34780838 (+) True G1541721
TU1764326 lncRNA downstream 43717 34782152 ~ 34792158 (+) True G1541720
TU1764404 lncRNA downstream 134258 34872693 ~ 34872915 (+) True G1541793
XM_021571740.2 mRNA upstream 95429 34633226 ~ 34639957 (+) False LOC110496067
XM_021571741.2 mRNA upstream 102429 34627456 ~ 34632957 (+) True LOC110496068
XM_021571735.2 mRNA upstream 111150 34618554 ~ 34624236 (+) True LOC110496065
XM_021571718.2 mRNA upstream 160449 34502936 ~ 34574937 (+) False pleca
XM_021571745.2 mRNA downstream 145057 34883492 ~ 34898413 (+) False mbpa
XM_021571748.2 mRNA downstream 145057 34883492 ~ 34898413 (+) False mbpa
XM_021571747.2 mRNA downstream 145059 34883494 ~ 34898413 (+) False mbpa
XM_021571749.2 mRNA downstream 145059 34883494 ~ 34898413 (+) False mbpa
XR_002469505.2 mRNA downstream 180102 34918537 ~ 34921751 (+) True LOC110496074
TU1763847 other upstream 605727 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 656312 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 1197822 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 1244265 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 1276962 33455560 ~ 33458424 (+) False LOC110496797
TU1764399 other downstream 145079 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 145079 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 544168 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 636809 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 636945 35375380 ~ 35380006 (+) False G1542037

Expression Profile