RNA id: TU1764326


Basic Information

Item Value
RNA id TU1764326
length 2138
lncRNA type antisense_over
GC content 0.44
exon number 7
gene id G1541720
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34782152 ~ 34792158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacacatacagtacagacactaCCTTACTCTCTTCTATTATCCCAACCCCCTTAAAAACTGTATCAAgttgggggctcccgagtggcgcggcggtctaaggcactgtatctcagtgctagatgcggcactacagatcctggttcgattccaggctgtatcacaaccggccgtgactgggagtcccatagggcggcgcacaattggcccagtgtcgctAGGGTTGGCCGGGGAAGccatttattgtaaataagaatttttccttaactgacttgcctagtaaataaAGGTGCAAAAGCTCCATTTCAGTTGTGTGACCTGTCGCCGATCTTACTGCAGCCCACTCCCCTTGTGGAATAGAATTGATTGTAAACATTAAATTATTCAGCCAGGCTGCCTCTATGCACCAGGTACCCTCAGTTATGCTCACATAGTGCTCTCTGGGTGAGAACATGCAGGGAGGGGAAGATTATCTTACTCAGCCCCAGTGTAGAGCTGTTGCCAGTAGATGCCTCCCATGGATGAAATACAGACTCTCTAGAGCCAGACACAATAGAGGCAGAATGTCACTTTCTGAGACACAGTTGCAGCAAGTGTCTTACCACAGACTAACTGTCTCATCAAGATAGGAAATGAAAAAGGAAATGAATGGGGTTCCGAATCAAACGTTCAAATAAATAACTTGCTTATGTGGACAAGAGAGTTTTATGAGAAAAGTGTATCTGAAGTTAGAATTTGTAACCTCGATTAGTAATCTGGTCAAATAGCGATACTGAATTATGTTGTTTTCCCGCTCTGTCCAACATAATTTCAATTCACTCTCAAGTGTTATTGGGTGAAAGGTTATCCCTGTATAAAGATCATTCAATCATAACACATGGGACATATAACTAATAAAATAGAACCAATCAGCTCAATAGACCTCATCAAATTGACAGAATATGATTTGGTTAACAACTGTATGGATCTTCTCAAAAGCTTGTCACAATTCACTGAACGTTAAAATGACCCCACAGCCTTCTAAAAATTATCCTGTTACAATAAGTAGGGAGGATGGGTTTAATTGGGGTAAAAAGTAATAAAGTGATTGCCATCCCCCATCGACTGGAAACCTTATATGGTAATGAAATCGCCCAGTTGACTTGCTGAAACTTGAATTATGTGGTCACATTAAGTAGtgacagaaaaacaaacataaatCTGAAGTGTTTAGTATCATCTCATCGTAGAGAAAGAAGGTACTGTGTTCTATGGCATTCTGGCTATCATGAGGATAAGGTTTCCATGCCTCATTAAAAACAACCTAATACTGACAATGTTTTTAATAACACAAAATATAATCACTGAATATAACATGACATTTATCAGTTATATTAGTCACATACTGAGAACAGGTCATGTACATACCCCAAGAGCAGGTAGTCTTTGTGTGCAAACAACAGCAACTTTCAACTTCcagtctgtctctccatctaatTGGTCCGTCCTGATGAAACATGAACCAGTCTTCTCTGATGTCCTTAGAAATATCATATCTGCAGGGATCCTTTGGTTCTTTTCAACTATGATGAGGTCTCCAACTTGTATGTCAGAACTCTTCAATTGAACTTTACCTCGCACTGTGAGCTTGCTGTAGAGCTGGGAGTTCATCTCCTTGTCCCGCTGGTACCGTCGGACCTCGTCCACAGCCTCACGTACCATTGTAacagccatcacaaagccCAGAGGTGCCCAGTAGGTGTACAAGTACCCTATTTTTAGGGATGGCACGAACTGGGAGCAGGCCACCACTAGAAAGTACAGGTTGAGGAAGAACTTGAACTGCTGGTAGAGAACCCCAGGCACAAAGGTGAAGAAGTTGTACTTCTGGTTTTTAATGGCGTTCTTGGGGTACTTCTCCTCACACTTCTCCGGGTGGCCCAGCCACACTGTCCGGGCTTTCAGCTCCTTCGTCCTCCGACACATACGAGCCAAGCAGTCACAGCAGCTGCCACAGAGGATCTTCCAGCCTCCCATGAGGAGCCACCCCaggcctctctgtctctggttgGCCCTGGCCCGAGGCAGGGTGTGGTAGTCACTCTCATCATTCTCAAAACCTTCCTCAGACATCATCAGGGGCATCTCGTCCAAGTTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764328 lncRNA upstream 1314 34778921 ~ 34780838 (+) True G1541721
TU1764317 lncRNA upstream 31655 34748936 ~ 34750497 (+) True G1541713
TU1764298 lncRNA upstream 38771 34741475 ~ 34743381 (+) True G1541696
TU1764299 lncRNA upstream 42624 34713839 ~ 34739528 (+) True G1541697
TU1764295 lncRNA upstream 43717 34735386 ~ 34738435 (+) True G1541694
TU1764404 lncRNA downstream 80535 34872693 ~ 34872915 (+) True G1541793
TU1764419 lncRNA downstream 113769 34905927 ~ 34906162 (+) True G1541808
TU1764439 lncRNA downstream 137365 34929523 ~ 34929843 (+) True G1541827
TU1764440 lncRNA downstream 137821 34929979 ~ 34930187 (+) True G1541828
TU1764427 lncRNA downstream 175832 34967990 ~ 34968339 (+) True G1541815
XM_021571740.2 mRNA upstream 142195 34633226 ~ 34639957 (+) False LOC110496067
XM_021571741.2 mRNA upstream 149195 34627456 ~ 34632957 (+) True LOC110496068
XM_021571735.2 mRNA upstream 157916 34618554 ~ 34624236 (+) True LOC110496065
XM_021571718.2 mRNA upstream 207215 34502936 ~ 34574937 (+) False pleca
XM_021571745.2 mRNA downstream 91334 34883492 ~ 34898413 (+) False mbpa
XM_021571748.2 mRNA downstream 91334 34883492 ~ 34898413 (+) False mbpa
XM_021571747.2 mRNA downstream 91336 34883494 ~ 34898413 (+) False mbpa
XM_021571749.2 mRNA downstream 91336 34883494 ~ 34898413 (+) False mbpa
XR_002469505.2 mRNA downstream 126379 34918537 ~ 34921751 (+) True LOC110496074
TU1763847 other upstream 652493 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 703078 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 1244588 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 1291031 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 1323728 33455560 ~ 33458424 (+) False LOC110496797
TU1764399 other downstream 91356 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 91356 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 490445 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 583086 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 583222 35375380 ~ 35380006 (+) False G1542037

Expression Profile