RNA id: TU1765647


Basic Information

Item Value
RNA id TU1765647
length 239
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1542865
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34900401 ~ 34900639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactcaaaattgagctcaggtgcatcctgttgccattggtcatccttgagatgtttctacaatttgattggagtccacctggtaaattcaattgattggacatgatttggaaaggcacacacctgtctacataaggtcccaccaTTGACAgtgcagagcaaaaaccaagccatgaggtcgaaggaattgtcatagagctccgagacaggtttGTGAGAAGGCACtaatctggggaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765646 lncRNA downstream 19 34900147 ~ 34900382 (-) True G1542864
TU1765639 lncRNA downstream 835 34899308 ~ 34899566 (-) True G1542857
TU1765524 lncRNA downstream 156255 34743623 ~ 34744146 (-) True G1542753
TU1765501 lncRNA downstream 231414 34668766 ~ 34668987 (-) True G1542731
TU1765499 lncRNA downstream 234905 34665242 ~ 34665496 (-) True G1542729
TU1765649 lncRNA upstream 3504 34904143 ~ 34904354 (-) True G1542867
TU1765651 lncRNA upstream 4398 34905037 ~ 34905317 (-) True G1542869
TU1765631 lncRNA upstream 6076 34906715 ~ 34907609 (-) True zbtb22a
TU1765663 lncRNA upstream 25084 34925723 ~ 34925946 (-) True G1542881
TU1765664 lncRNA upstream 28524 34929163 ~ 34929379 (-) True G1542882
XM_036952540.1 mRNA downstream 91901 34795394 ~ 34808500 (-) True sall3b
XM_021571743.2 mRNA downstream 105472 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA downstream 105472 34737827 ~ 34794929 (-) False atp9b
XM_021571742.2 mRNA downstream 195580 34645116 ~ 34704821 (-) False nfatc1
XM_021571736.2 mRNA downstream 281034 34595240 ~ 34619367 (-) True fbxl6
XM_021571750.2 mRNA upstream 6484 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 33969 34934608 ~ 34943891 (-) False LOC110496076
XM_021571759.2 mRNA upstream 96833 34997472 ~ 34999239 (-) True LOC110496078
XM_021571760.2 mRNA upstream 111371 35012010 ~ 35016157 (-) True LOC110496079
XM_036951038.1 mRNA upstream 116339 35016978 ~ 35018421 (-) True LOC110496800
TU1765523 other downstream 160762 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 737943 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1226170 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1289508 33602474 ~ 33610893 (-) False LOC110496048
TU1765772 other upstream 236998 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 274667 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 446256 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 551979 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 594683 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile