RNA id: TU1765649


Basic Information

Item Value
RNA id TU1765649
length 212
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1542867
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34904143 ~ 34904354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttgagtcaataaatattcaacccctttgttatggcaagcctaaataagttcaggagtaaaaatgtgcttaacaagtcacataataagttgcatgcacactctgtgtgcaataatagtgctgAACAAGATTTTTGAATGACCACTCCAcagatacaattatctgtaaggtccctcagtcggccagtgaatttcaaccacaaagaccaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765647 lncRNA downstream 3504 34900401 ~ 34900639 (-) True G1542865
TU1765646 lncRNA downstream 3761 34900147 ~ 34900382 (-) True G1542864
TU1765639 lncRNA downstream 4577 34899308 ~ 34899566 (-) True G1542857
TU1765524 lncRNA downstream 159997 34743623 ~ 34744146 (-) True G1542753
TU1765501 lncRNA downstream 235156 34668766 ~ 34668987 (-) True G1542731
TU1765651 lncRNA upstream 683 34905037 ~ 34905317 (-) True G1542869
TU1765631 lncRNA upstream 2361 34906715 ~ 34907609 (-) True zbtb22a
TU1765663 lncRNA upstream 21369 34925723 ~ 34925946 (-) True G1542881
TU1765664 lncRNA upstream 24809 34929163 ~ 34929379 (-) True G1542882
TU1765665 lncRNA upstream 25293 34929647 ~ 34929925 (-) True G1542883
XM_036952540.1 mRNA downstream 95643 34795394 ~ 34808500 (-) True sall3b
XM_021571743.2 mRNA downstream 109214 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA downstream 109214 34737827 ~ 34794929 (-) False atp9b
XM_021571742.2 mRNA downstream 199322 34645116 ~ 34704821 (-) False nfatc1
XM_021571736.2 mRNA downstream 284776 34595240 ~ 34619367 (-) True fbxl6
XM_021571750.2 mRNA upstream 2769 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 30254 34934608 ~ 34943891 (-) False LOC110496076
XM_021571759.2 mRNA upstream 93118 34997472 ~ 34999239 (-) True LOC110496078
XM_021571760.2 mRNA upstream 107656 35012010 ~ 35016157 (-) True LOC110496079
XM_036951038.1 mRNA upstream 112624 35016978 ~ 35018421 (-) True LOC110496800
TU1765523 other downstream 164504 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 741685 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1229912 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1293250 33602474 ~ 33610893 (-) False LOC110496048
TU1765772 other upstream 233283 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 270952 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 442541 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 548264 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 590968 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile