RNA id: TU1765664


Basic Information

Item Value
RNA id TU1765664
length 217
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1542882
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34929163 ~ 34929379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagctgagctctttaatcaccacttcattaagtcaggattcctatttgactcagccatgcctcattgcctgtccaacatttcctcatctcccaccccttctaatgtgcCTAGCCGCGAtactcctccctcttttccccctgccccACTACAAAGTTGCTCCCTGCAGTCTGTCACTGAGTCCAAGATGCTAAAGGacctccttaaacttgacccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765663 lncRNA downstream 3217 34925723 ~ 34925946 (-) True G1542881
TU1765631 lncRNA downstream 21554 34906715 ~ 34907609 (-) True zbtb22a
TU1765651 lncRNA downstream 23846 34905037 ~ 34905317 (-) True G1542869
TU1765649 lncRNA downstream 24809 34904143 ~ 34904354 (-) True G1542867
TU1765647 lncRNA downstream 28524 34900401 ~ 34900639 (-) True G1542865
TU1765665 lncRNA upstream 268 34929647 ~ 34929925 (-) True G1542883
TU1765667 lncRNA upstream 1628 34931007 ~ 34931240 (-) True G1542885
TU1765628 lncRNA upstream 3660 34933039 ~ 34943879 (-) True LOC110496076
TU1765673 lncRNA upstream 15832 34945211 ~ 34945415 (-) True G1542891
TU1765674 lncRNA upstream 16259 34945638 ~ 34946099 (-) True G1542892
XM_021571750.2 mRNA downstream 5207 34907123 ~ 34923956 (-) False zbtb22a
XM_036952540.1 mRNA downstream 120663 34795394 ~ 34808500 (-) True sall3b
XM_021571743.2 mRNA downstream 134234 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA downstream 134234 34737827 ~ 34794929 (-) False atp9b
XM_021571742.2 mRNA downstream 224342 34645116 ~ 34704821 (-) False nfatc1
XM_036952542.1 mRNA upstream 5229 34934608 ~ 34943891 (-) False LOC110496076
XM_021571759.2 mRNA upstream 68093 34997472 ~ 34999239 (-) True LOC110496078
XM_021571760.2 mRNA upstream 82631 35012010 ~ 35016157 (-) True LOC110496079
XM_036951038.1 mRNA upstream 87599 35016978 ~ 35018421 (-) True LOC110496800
XM_021571761.2 mRNA upstream 122016 35051395 ~ 35093815 (-) False ago3b
TU1765523 other downstream 189524 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 766705 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1254932 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1318270 33602474 ~ 33610893 (-) False LOC110496048
TU1765772 other upstream 208258 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 245927 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 417516 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 523239 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 565943 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile