RNA id: TU1765777


Basic Information

Item Value
RNA id TU1765777
length 1915
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1542993
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35147641 ~ 35149555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTGCTGGCAAGGCAATTTGTGAGGCATTTCAATTGTTGATCACTCACTTTGAGACCTTAACATTGTTtcccgtggcttttgtggagcgatgggtaatgatgctttgtGGGTGAATGCTGTCTGTTTGCAGatggtccctggttcaagcccaggttggggcaaggagaagcaatatacagtggggcaaaaatgtatttagtcagccaccaattgtgcaagttctcccatttaaaaagatgagaggtctgtaatttatcataggtacacttcaactatgacagacaaaatgagaaaaaaagatccagaaaatcacattgtaggattttttatgaattttgttGCAAATTaattgtaacctcacttttgagaaaattgcccttgaatgttttggtacctactggaccTGGTACCTACTCTtctgtctacacccattcagcatcattcacaccctttTAAGCTTTAGCCTCACCCATCTCTAAGGATTCACATTTGAGGCTATGTCCTAAACAACCAAAGCTTTCAatactaaaggctggtttatactacgggtgTGCTCTGGCTATTCGTAAACTCAGAGCTTTGTCAGATTGgccattcgtaaattcagagcatttcgcTCTCAGAAggcacactggacactctggccgAAAAGGAGGGCTAATCCGAGTGTTCTGActtaacaacagcagtcaagcaccctagctggctaacgttggctagcttgctagctacttccagacacaaatgagagaacacctcactctgaccattttactcacactagcagagctggttaggccgtTTTTATGTTtaccagagcgttggtgactgcaactgtgctgctggcaacaatttaatcacgctttttttgccaacgttcactgacaccggccatattcaacagctGTTGAGCGTTCATAAACACTCcaacgagagtgctctgaaatcggagtagatagccagagcaaatttaccagctacatctatcgacagttgtcgcagtgacatcataaacattctattgaaatagttaCTTACATAGTGGcatcttttgtttagacatgtagctagctatataaACAATttaccataatcccaactcataacgttactaccctacatgaatctgcaggtagctaactaatcaggttcaatgttagctagctaacattaggccataactagcaatgcaaatggctctgagacgCGAATAAAATAACTACACATATCATACACATAACATTATCTAGCCAGCCAGCttgaaatgaaaacgactttgacaaaattagaaatgtgtaatatctgaaaatgtagctagctagactctcttacccgtatacatagATGGACGTTTCTCCCgctctgtcatggatgccatggtttGAAGATGTAATTTGGAGAATTCTGTGTGTTCTTTTCGACTcagtctgcatatttgcaatcaaaacggcagatttttctcCATCGCCTTagtatcatactctaattccactgatttcaaaacgcggtcctccagaaagtggagagcaacacttattcAGTTCTACTacatgatatctttcaaaaaagctgcattaaaaaggattacctacacatactgaccatttcatggttatagacagaagcgtgcaaCATGGCAGACCGATCCGAGCTCATCTCTTGttatgtccagcccactcattatctcagccaatcatggctagcgggaaggttgctggctTTTTCCATAGCTAAACCAACTATGTTCATAATTTAAccattgtattcgtatttacagatggcatacaagtttgtttaAGGCACATGtaccagaaggcatttctgccaaaaaacacattttgattaaatAAAAGAAAAAAGTTTGCATTCAAATGGCGCACCTGTGAAGTGGTGACGTACGACATATACCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765774 lncRNA downstream 3474 35143824 ~ 35144167 (-) True G1542990
TU1765763 lncRNA downstream 27391 35119977 ~ 35120250 (-) True G1542979
TU1765641 lncRNA downstream 97360 35039208 ~ 35050281 (-) True G1542859
TU1765698 lncRNA downstream 172886 34974476 ~ 34974755 (-) True G1542914
TU1765696 lncRNA downstream 174546 34972215 ~ 34973095 (-) True G1542912
TU1765780 lncRNA upstream 4757 35154312 ~ 35154536 (-) True G1542996
TU1765783 lncRNA upstream 15368 35164923 ~ 35165151 (-) True G1542999
TU1765784 lncRNA upstream 15988 35165543 ~ 35165780 (-) True G1543000
TU1765785 lncRNA upstream 23733 35173288 ~ 35173583 (-) True G1543001
TU1765798 lncRNA upstream 42438 35191993 ~ 35192196 (-) True G1543013
XM_021571762.2 mRNA downstream 53824 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 53826 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 129220 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 131484 35012010 ~ 35016157 (-) True LOC110496079
XM_021571759.2 mRNA downstream 148402 34997472 ~ 34999239 (-) True LOC110496078
XM_036951039.1 mRNA upstream 1796 35151351 ~ 35203984 (-) False LOC110496081
XR_002469509.2 mRNA upstream 198389 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 228244 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 228244 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 251171 35400726 ~ 35404746 (-) False LOC110496091
TU1765772 other downstream 9087 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 408002 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 985183 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1473410 33657641 ~ 33674231 (-) True LOC110496049
TU1763213 other downstream 1536748 33604148 ~ 33610893 (-) True LOC110496048
TU1765778 other upstream 25751 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 197340 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 303063 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 345767 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 861432 36010987 ~ 36012686 (-) True G1543346

Expression Profile