RNA id: TU1765780



Basic Information


Item Value
RNA id TU1765780
length 225
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1542996
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35154312 ~ 35154536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ataatcaatgcttggagtttgtcagaatttgtggggttttatttgtccacccgcctcttgaggattgaccacaagttctcaatgggattaaggtctggggagtttcctggccaaaatattgatgttttgttccccaagccacggttgacagaggaagaacaatgattccgaccaccaccctccctttgaagcttccagtctgttattcgaactcaatcagcatgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1765777 lncRNA downstream 4757 35147641 ~ 35149555 (-) True G1542993
TU1765774 lncRNA downstream 10145 35143824 ~ 35144167 (-) True G1542990
TU1765763 lncRNA downstream 34062 35119977 ~ 35120250 (-) True G1542979
TU1765641 lncRNA downstream 104031 35039208 ~ 35050281 (-) True G1542859
TU1765698 lncRNA downstream 179557 34974476 ~ 34974755 (-) True G1542914
TU1765783 lncRNA upstream 10387 35164923 ~ 35165151 (-) True G1542999
TU1765784 lncRNA upstream 11007 35165543 ~ 35165780 (-) True G1543000
TU1765785 lncRNA upstream 18752 35173288 ~ 35173583 (-) True G1543001
TU1765798 lncRNA upstream 37457 35191993 ~ 35192196 (-) True G1543013
TU1765867 lncRNA upstream 116783 35271319 ~ 35271564 (-) True G1543076
XM_021571762.2 mRNA downstream 60495 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 60497 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 135891 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 138155 35012010 ~ 35016157 (-) True LOC110496079
XM_021571759.2 mRNA downstream 155073 34997472 ~ 34999239 (-) True LOC110496078
XR_002469509.2 mRNA upstream 193408 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 223263 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 223263 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 246190 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 246190 35400726 ~ 35405239 (-) False LOC110496091
TU1765772 other downstream 15758 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 414673 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 991854 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1480081 33657641 ~ 33674231 (-) True LOC110496049
TU1763213 other downstream 1543419 33604148 ~ 33610893 (-) True LOC110496048
TU1765778 other upstream 20770 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 192359 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 298082 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 340786 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 856451 36010987 ~ 36012686 (-) True G1543346

Expression Profile