RNA id: TU1765867


Basic Information

Item Value
RNA id TU1765867
length 246
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1543076
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35271319 ~ 35271564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtccataggacaacaatcagtcgtatattgcacaaatttggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgccaaacgttatgtttggcgtaaaagcaacacagcccatcaccctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765798 lncRNA downstream 79123 35191993 ~ 35192196 (-) True G1543013
TU1765785 lncRNA downstream 97736 35173288 ~ 35173583 (-) True G1543001
TU1765784 lncRNA downstream 105539 35165543 ~ 35165780 (-) True G1543000
TU1765783 lncRNA downstream 106168 35164923 ~ 35165151 (-) True G1542999
TU1765780 lncRNA downstream 116783 35154312 ~ 35154536 (-) True G1542996
TU1765855 lncRNA upstream 8103 35279667 ~ 35280647 (-) True G1543064
TU1765854 lncRNA upstream 10959 35282523 ~ 35283024 (-) True G1543063
TU1765881 lncRNA upstream 35119 35306683 ~ 35306886 (-) True G1543081
TU1765889 lncRNA upstream 44744 35316308 ~ 35316512 (-) True G1543089
TU1765892 lncRNA upstream 48243 35319807 ~ 35320484 (-) True G1543092
XM_036951039.1 mRNA downstream 67335 35151351 ~ 35203984 (-) False LOC110496081
XM_021571762.2 mRNA downstream 177502 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 177504 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 252898 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 255162 35012010 ~ 35016157 (-) True LOC110496079
XR_002469509.2 mRNA upstream 76380 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 106235 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 106235 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 129162 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 129162 35400726 ~ 35405239 (-) False LOC110496091
TU1765778 other downstream 91291 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 132765 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 531680 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1108861 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1597088 33657641 ~ 33674231 (-) True LOC110496049
TU1765900 other upstream 75331 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 181054 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 223758 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 739423 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 2029944 37301508 ~ 37302174 (-) True G1544806

Expression Profile