RNA id: TU1765889



Basic Information


Item Value
RNA id TU1765889
length 205
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1543089
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35316308 ~ 35316512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agcttcggtactgggtgccACGGTGTGTGAAAGCTAGccagtggtccagggattacggcaggaatctgccgttgttgtggagagacagtccgatattGGTAGActagcgagtattatccaggctaaaaacagggctggtatctgtgcagaaggtaaaagccgctagcagtgcctaacaatgactaaatagcttgtagctaattag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1765881 lncRNA downstream 9422 35306683 ~ 35306886 (-) True G1543081
TU1765854 lncRNA downstream 33284 35282523 ~ 35283024 (-) True G1543063
TU1765855 lncRNA downstream 35661 35279667 ~ 35280647 (-) True G1543064
TU1765867 lncRNA downstream 44744 35271319 ~ 35271564 (-) True G1543076
TU1765798 lncRNA downstream 124112 35191993 ~ 35192196 (-) True G1543013
TU1765892 lncRNA upstream 3295 35319807 ~ 35320484 (-) True G1543092
TU1765893 lncRNA upstream 4266 35320778 ~ 35321048 (-) True G1543093
TU1765887 lncRNA upstream 9330 35325842 ~ 35327790 (-) True G1543087
TU1765888 lncRNA upstream 11378 35327890 ~ 35330154 (-) True G1543088
TU1765886 lncRNA upstream 15760 35332272 ~ 35334302 (-) True G1543086
XM_036951039.1 mRNA downstream 112324 35151351 ~ 35203984 (-) False LOC110496081
XM_021571762.2 mRNA downstream 222491 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 222493 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 297887 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 300151 35012010 ~ 35016157 (-) True LOC110496079
XR_002469509.2 mRNA upstream 31432 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 61287 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 61287 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 84214 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 84214 35400726 ~ 35405239 (-) False LOC110496091
TU1765778 other downstream 136280 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 177754 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 576669 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1153850 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1642077 33657641 ~ 33674231 (-) True LOC110496049
TU1765900 other upstream 30383 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 136106 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 178810 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 694475 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1984996 37301508 ~ 37302174 (-) True G1544806

Expression Profile