RNA id: TU1764674


Basic Information

Item Value
RNA id TU1764674
length 6136
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1542037
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35373871 ~ 35386463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACTACTGTAAATCAAAAGTAAAAAGCAAAACACATTTTGCATTGATAATGAGACAGTGACATCTTAAGAATGAAAACTTACCAGCACAGAATCAATAACTAATATTTTTCATCACGTTTGTGTTACAATTACATTTCAAACATTTTCATACTCATGTTGTACGTGCACACAGTGCCTAAATATTCAATGAGTAATGCTTACTGAATGTCCAATGAAATCTTTGACATTTAAAAATGACCGACTTTCTATAACGTGCCAAACCACCTTCCAGAAATCAAAGATGTTTAAGTAATCACCATTACCAAACTATTGACTGTTTGGAAAGCAGATCTAACCGTTTCCCCAAAGGATGCAATTAGTGTGCGTTATCAAATGTGCAATATATCCCATGTTAAACATAATAAAAAGAGAGACACTCATGGTGTCTGTGTACATAAAGCTCTTACAAAAATAGAAGAAAACGTTGCCAACAGCAGCAGGACAGATttgaacagtggtgtaaagtacttaagtagtactttaaagtatttttatgtGGTCTGTACTTTacgatttatatttttgacaacttttacttacttttaccctgacacccaaaagtactaatcacattttgaatgcttagcaggacaggaaaatggtccaattcacacagttatcaagagaacacgtggtcatccctctgcctctgatctggcaagCTAACTAACACAAATGCATcgtttgtaaataatgtcagtgTTGGaaagtgcccctggctatcctacatttttaaaacaagaaaGTGGTAcagtctgctttgcttaatataaggaatttgaaatgatgtacacttttacttttgatacttaagtatatttagaaccaaatacttagTATTttcctgggtgactttcacttgagtaactttctattaaggtatctatcattttactcaagtatgacaattgggtactttttcccacCACTGGATATGAATAACTGTTTAAAGTATGACAAGTTTGTAATCTATTCAAAAGGCACATTCTTGcagtagtgtacaaaacattaagaacacctactctttccatgacagactgaccagttgtatcccttattgatgtcacttgttaaaaccatttcagtcagtgtagatgaaggggaagagacaggttaaagaagaaatgttaagccttgatacaattgagacatggattgtgtatgtgtgcaattcagagggtgaatgggcaagacaaaagattgaagtgcctttgaacaggttattgaacagggtatggtagtaggtgctaggaGCTGCTGGGTGTTTTtcacaggtgggggggggggggcgggcaattcaatattaggaaggtgttcttaatgttttgtacaatcagtgtaaatatgaatatataaaaaataaaaataaacaaatgttaAATGGATAATCCACTCCAGGAGTGAAACTCCTGTCAATTTGGTGATGGTTTGTTAATCCCTATTTCCAAAAAGACTATCATATTTCATAACGCCTTTAAAAAATATCcaatatgcagaaattgcttTGCTATTTCCTGGTTGAAATTTGTTTTAGATTTCGCATAATTgaagtttgtgacaaaacaagcaagtgtaGAAAATTATTGTACCATCCAAACCGCTTTTTAGTAACAAAAAggtattgtattttcagctgtttgaagctggtgtaaaaaaaaactaaagtaaAAGACCAAAAACAAAAATTAAGAACGTGAAGTATAGAAATTccgcacatagaacatatctttatttattttttttaaactttatttaactagtcaagtcagttaagaacaaattcttatttacaatgacggcctaccggggaacagtgggttaactgccttgttcaggggcagaacaacacatatttatcttgtcagctcagggatttgatccagcaacctttcagttactggcccaacgctctaactattaggctacctgccgccacaggTAAACACTAGgatatctaccacttcttagacttgcgttCAAGTACACAGTGCACCGTCAGATCAATATCCTTTCCTCCAACTACGTACTAATGGACCTTAGCAGCACAGGTCCATTGTGTTGCATTCACAACCTCACTCACTGTTTTGAGCAAGACAAAATCTCTAccaggttgaacatggtgagattgtaaCTCTAAAATTGATAGTGCAGTGTTTGAGATTTTACAGCTAaactagctacttcacatgctgatattgactttAGTAATATTGTGTATAGCTATATTTTCTAGCAAGCTAGCCAGCCCTCCTGTCTGGAGAGAAGTGTAGTTGACTTAAGCTCCAAAGTATTTCCGCAACAATTTTCAAGTTGCTTCCTACCTTAACATAACGACGAAAATACATATCGGCGTTATTTAATAATGAAAATCATAGGAAATAGTGGTTTGGAGTGAATTATTAATTTAACCATTGCTATAGCTATGAAGACAACCATGGTTAACTCGGAAACTTATTTAGTACTCATCAAAAACAAtgatatacagtccattcggaaagtattcagtccttggcattttccacatttattttaaaatggattaaacaaaacattttcctcatcaatgtacacacaataccccataatgacaaagcgaaacaggtttttagaaatgtttgcaaatgtaataaaaaaacagaaatattttcataagtattcagaccctttgctgtgagactcaaaattgagctcaggtgcattctgtttcaaTTGCTCATCTTTGAGatctttctacaacttggagtccacctgtagtaaattcaattgattggacattatttggaaaggcacacacctgtctatattaggtcccatagttgacaatGCTTGTCCGAGGgaaaaccaagccaagaggtcaaagaaattgttcgtagagctccgagacaggattgtgtcgaggcacagatctgggaaaggacaccaaaaaatgtctgcagcattgaagttcccgaagaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaagacttttcctagagctggccacccggccaaactgagcaatcaggggagaagggccttgatcagggaggtgaccaagaacccgatggtcactctgacagagctcaagagttcctctgtggagatgggagaaccttccagaagaacaaacatctctgcagcactccaccaatcaggcctttatgttagagtggccaaacggaagccactcctcagtaaaaggcacatgacagaccatttggagtttgccaaaaggcacctaaaggactccgaCCATGAGAATCAAgcttctcttgtctgatgaaaccatgattgaactctttggcctgaatgacaagaatcacatctggaggaaatctggcaccatccataTGGTGAATCATGgcggtggcagcgtcatgctgtggggttgtttttcagcgggaagggactgggagactagtcaggatcaagggaaagatgatcggagcaaagtacagtgagatccttgatgaaaacctgatccagaacgctcaggaccttaTATTGGAAGAACCTTCACCCCAACAGgacggccctaagcacacagccaagacaacacaggagtggctttgggacaagtctctgaatatccttgagtgacccagccagagcccagacttgaacccgatagaacatctctggagagacctgaaaatagctgtgcagcgacgctccccatccaacctgacagagtatgagaggatctgcaaagaaaaatgggagaaactccccaaatacaggtgtgccaagcttgtagtgtcatacccaagaagactcaaggctgtaaccactgccaaaggtgcttcaacaaagtacgagtaaaaggtctgaatacttgtaaatgtgatatttcatatatttttttatacatttgcaaaaatacattttagaataaggctgtaacgtaacaaaatttggaaaaagtaaatcggtctgaatactttccgatgcaAATGTCCATTAGtggaatttttttttattgattttcACTTCACCCCCCTGGCATGATGTAAGTAATGCTCATGTAGCTCTGAGACGTCACTAAATCTTACCCAACAATCAGCACACTCAAAGCCAATCCGCTGTTTTTTGCCCCTTGATATCACAAATGTTGTTGAGGCTCTAAAGAAAGCATCATCATTACCCTTAGACTTTTTCCATCTTTGAGGTGGTACATTCTGATGACCGTTATCCAAGGGACATGGTGGTTCATGGGTCGGCATGTGTGGGGTGTCTGTTTTTGGCATACATTGAGTAGGTTCATAAATAAGGACACATGAGGGGCATGAGCACTGAGGTAGATCCGAGTTGTTTGCCTCACAACAATTATTGCTAGGGCTGGTTCGCCCTTCATGTTCAAGGGACACAGTGTTACAGGGCGAGTCGTGGACTGAGGATAAGCTAAAGTTTAGAATCTCTTGGGGCTCTTCTTCTGTGTCCGAAACAATGACCGGTGGCTGTGAGGATATTTTAGGGACAACATAGAGACGATCAGGGTGAGGATACCTATACATGTTCCTTTTCTTTGACAGAAGAAGACTAGGTACTGTCGTAGGGGATAGAGGGGTGACTCTCGCTCTTGGTTTGTTTGAGAGCTTGGAGGTCAGGGAAGCAGAAACTACATTTGCTGAACTGCTATATGTTTTCTTCCCCCCTATAAGATGGCAAACCTGGTGGGCTTGGAGCAAGTCTGTGGTTGTAAATCTTGCATTACATTTTCTACAGTGATAGGGAAATCGAAGTGGTTCCAATGGCCCTTCAGGGAGAGGGATAACAGGGCGGGCTTTGTGAGCCTTCAAGTGATTCTTTAAGGCTAGGTAACTAGGAAATGGGAGCTTGCAAGGGAGACAATAGTGCGAGCTAGCAGCTCTGTGTAACAGACGATGTCTCTCCAAATTTCTGAAACTGGTGAAACCCTTTTCACAcgtgtcacatttcaggctttcaCACGGCTGGTGATTTTCGCACAGATGGGTATTTAAGTCTTCTTCCGTGATATAGGTTTTGGGACATAACGGACAAACATAGGGTCTCTGCGCTGCATGTTCCTGCATGTGCTCCCTATAGGAGCCTAAGAAGCGAAACTCTAAATTGCACTGAGTGCATGAGAAGCTACAGCGTTTTTCTCTGTGTCGTCCCCGATGCAACCAGAGCTTATTCCACCGGTTAAAGGATTTTCCACATTGTCCACGGGGATATCTGTCACAAGGAGCATGGGTCTGAAAACGAGAGTGAAAACCTGAAGGCTGTTGAACCACACGTACTGAATTACAACTCATTACAGAGGGGGACAATATGGCAGAACTTGCACACGTGGCGTTTGAGGGAGAAGGTCGATTTATCTCTAACCCATTACCTGGGATCTGGCAAGCAGGTTTGGGGTTTTGTGGAAGCACATCAGAGGAATACTCCTCCATAGTTTCCAGAGGTGGCAGGGGCTCAGGCTCCTTGCATTTAGGATGTTGGTCATCAGTAGATAACATTTCCTGATTATCATTGTACAGAAAATCAATTTCAGTCACATGCATCGGATTTTGCAGAGATTGGGGTTCATGCCAGACCTCTGACAAGGACGAATTGcatgccctctcctctccacttgaTTTGCAGCACACTTTACAATGAACACGTAATTCAGGAACCTCATACCGTTGTCCACAGATCTCACAAAGGTTTGGCTTGTTATTAGTGTGCGTTTGCAGATGAAGAATGTACTGACACCAGCGACGATTAAGTTGTTTGCAAATCTGACATTTAAAGTACATCGGGGTATTAATCTGCCCATCAGCCCTTTGCTCCACCAGGAACCCCTCAATGTCAACCTTGTTTCCATCTCCTTCATCTCTAGCCTCAAAACACACTTTGGAGACTTGATGTGTGCGCAAGGATGAGAAGTCGCTAAAGGCCTGACCACAGTGGTTACAGAAGAAAGGCATCTCTCCTGAGTGCATATGAGAGTGGGTTTTGAGCTCCCTAAGCAGAACAAAGCCTTTTCCACACACAGAGCAAGCATACGGTTTAACAGGCCAGTGTGTTTTTTCATGTGCATTGAAACTTGAGAACGTGATAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764670 lncRNA upstream 664 35372838 ~ 35373207 (+) True G1542036
TU1764664 lncRNA upstream 6325 35364838 ~ 35367546 (+) True G1542032
TU1764606 lncRNA upstream 46118 35325690 ~ 35327753 (+) True G1541982
TU1764649 lncRNA upstream 57039 35316632 ~ 35316832 (+) True G1542017
TU1764647 lncRNA upstream 64010 35309643 ~ 35309861 (+) True G1542015
TU1764684 lncRNA downstream 6965 35386971 ~ 35387648 (+) True G1542038
TU1764689 lncRNA downstream 12948 35392954 ~ 35393179 (+) True G1542043
TU1764690 lncRNA downstream 14120 35394126 ~ 35394379 (+) True G1542044
TU1764693 lncRNA downstream 16375 35396381 ~ 35396998 (+) True G1542047
TU1764723 lncRNA downstream 20717 35400723 ~ 35408980 (+) False G1542052
XM_036952546.1 mRNA upstream 25576 35335048 ~ 35348295 (+) False tomm40l
XM_021571765.2 mRNA upstream 25576 35335356 ~ 35348295 (+) False tomm40l
XM_021571766.2 mRNA upstream 25576 35335507 ~ 35348295 (+) False tomm40l
XM_036952545.1 mRNA upstream 25576 35335507 ~ 35348295 (+) True tomm40l
XM_036952544.1 mRNA upstream 49207 35244197 ~ 35324664 (+) False LOC110496082
XR_005037450.1 mRNA downstream 32765 35412771 ~ 35427965 (+) False LOC118941149
XR_005037449.1 mRNA downstream 32765 35412771 ~ 35433941 (+) True LOC118941149
XR_005037437.1 mRNA downstream 61137 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA downstream 61137 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA downstream 61137 35441143 ~ 35504636 (+) False LOC118941148
TU1764613 other upstream 90165 35282603 ~ 35283706 (+) True G1541989
TU1764399 other upstream 475460 34883514 ~ 34898411 (+) False mbpa
TU1764400 other upstream 475460 34883514 ~ 34898411 (+) True mbpa
TU1763847 other upstream 1244212 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 1294797 34078718 ~ 34079074 (+) True G1540996
TU1764735 other downstream 21831 35401837 ~ 35432356 (+) False G1542052
TU1764739 other downstream 27922 35407928 ~ 35425186 (+) False G1542052
TU1764736 other downstream 35182 35415188 ~ 35481348 (+) False G1542052
TU1764728 other downstream 72664 35452670 ~ 35481348 (+) True G1542052
TU1764702 other downstream 98829 35478835 ~ 35502933 (+) False G1542051

Expression Profile