RNA id: TU1764689


Basic Information

Item Value
RNA id TU1764689
length 226
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1542043
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35392954 ~ 35393179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctacacccattaaaaacCTCACAGCTATTCCACTACTTTGGCCCTATCTGATCctacaccagcctgggaggacGGGACACCTTCAAAACACCTTAAATCTTATGGAGTAAAATCTCATATACCCACGTACTTCTCTGCAACTGCCACCACAACATGTATCCTAAGTGAATCCTCAGTCATTCCTGCACCCATTCCTGCAGTACAGATGACAACCATGGCCATGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764684 lncRNA upstream 5306 35386971 ~ 35387648 (+) True G1542038
TU1764683 lncRNA upstream 12948 35373950 ~ 35380006 (+) False G1542037
TU1764677 lncRNA upstream 17775 35373871 ~ 35375179 (+) False G1542037
TU1764690 lncRNA downstream 947 35394126 ~ 35394379 (+) True G1542044
TU1764693 lncRNA downstream 3202 35396381 ~ 35396998 (+) True G1542047
TU1764723 lncRNA downstream 7544 35400723 ~ 35408980 (+) False G1542052
TU1764726 lncRNA downstream 7544 35400723 ~ 35409076 (+) False G1542052
TU1764777 lncRNA downstream 34858 35428037 ~ 35435399 (+) True G1542071
XM_036952546.1 mRNA upstream 44659 35335048 ~ 35348295 (+) False tomm40l
XM_021571765.2 mRNA upstream 44659 35335356 ~ 35348295 (+) False tomm40l
XM_021571766.2 mRNA upstream 44659 35335507 ~ 35348295 (+) False tomm40l
XM_036952545.1 mRNA upstream 44659 35335507 ~ 35348295 (+) True tomm40l
XM_036952544.1 mRNA upstream 68290 35244197 ~ 35324664 (+) False LOC110496082
XR_005037450.1 mRNA downstream 19592 35412771 ~ 35427965 (+) False LOC118941149
XR_005037449.1 mRNA downstream 19592 35412771 ~ 35433941 (+) True LOC118941149
XR_005037437.1 mRNA downstream 47964 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA downstream 47964 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA downstream 47964 35441143 ~ 35504636 (+) False LOC118941148
TU1764676 other upstream 6491 35375244 ~ 35386463 (+) False G1542037
TU1764682 other upstream 6491 35375380 ~ 35386463 (+) True G1542037
TU1764671 other upstream 12948 35375380 ~ 35380006 (+) False G1542037
TU1764613 other upstream 109248 35282603 ~ 35283706 (+) True G1541989
TU1764400 other upstream 494543 34883514 ~ 34898411 (+) True mbpa
TU1764735 other downstream 8658 35401837 ~ 35432356 (+) False G1542052
TU1764739 other downstream 14749 35407928 ~ 35425186 (+) False G1542052
TU1764736 other downstream 22009 35415188 ~ 35481348 (+) False G1542052
TU1764728 other downstream 59491 35452670 ~ 35481348 (+) True G1542052
TU1764702 other downstream 85656 35478835 ~ 35502933 (+) False G1542051

Expression Profile