RNA id: TU1764726


Basic Information

Item Value
RNA id TU1764726
length 1101
lncRNA type read_through
GC content 0.34
exon number 2
gene id G1542052
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35400723 ~ 35481348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGTCATATTTTAGGTTTTATTGAGATTAAAAACATCAAAAACAAAGTTTGACATTTCACTTTATTACATGAAACTTTCTAAATATTTGCTCTCtctaaaaaaacagaaattcacATTACCCTCAAATGAACGTTGGGGAGGTTTCACAGACCTGTTTCTgatcacagagataaatacataGGTAAAACTTACGGTATGTATCTCTATAGTTCTAACTGCATCTTGAAGAACATTGTATTAATCCAAGCAACAGACCAAGTTGAGAGACCAAGTTGAAAACATGAAACTAACAAGCTTTGGTCACAGGAACATGAATTCATACAAATGATAGATTCTGTTGTGTACCTCAATTACTATTTTTATATTACAGAATTTACGAAGTTGTAATGCAATATGAACTGTTGATATCATGGTCCAGCACATActtaattaaataaacaaataccaGACTAGATGAAGACATGTTTAACATACAATCTGAACATTTACACACAACATCACCCAGAGTCTGTGAAACCAAGCCATCCACTTCAGATGAAAGCCAAGTGATAAAAAACAAGTAAAAAGAGCTGACATAAAAAGTCTTAAAAAGAACTGTGAGGAGTGATGTTGAGTGAATTACAAGGATGATACTGGCAAACAAAACCATCACAATAGTGAATAACCATACATCTTCTAAGAGAAATCTTAAGGATGATGGATTGGAAGTTTACAGGTACCGTCTTGACTCCACAAGGTGAAGTATGCAATGAACCAAGTGAAAGAAAACAACTATGATTAGGGtacagtcccaaatggcaccatattccccttatagtgcattacttttgaccagggtccatggggctttggtcaaaagtagtgcactttataggtaaAAGGGTGCCATGATAGTGATACTAACAACATCTATATCGAAACAAAGATAGCTGGGACGGGGAAGTTGTTACATTCAAAGCTTTGGCAATTCAGGCAAATAAAATTAGAAGACATTAGCAATTCGAAAACTACAGAGCTTACGGAgagataaaaaacaaaaaacaaaatacttaaCTAATTCAATTGATTTAAACCATTTGAGCTTATTTGGACAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764693 lncRNA upstream 3725 35396381 ~ 35396998 (+) True G1542047
TU1764690 lncRNA upstream 6344 35394126 ~ 35394379 (+) True G1542044
TU1764689 lncRNA upstream 7544 35392954 ~ 35393179 (+) True G1542043
TU1764684 lncRNA upstream 13075 35386971 ~ 35387648 (+) True G1542038
TU1764683 lncRNA upstream 20717 35373950 ~ 35380006 (+) False G1542037
TU1764777 lncRNA downstream 18961 35428037 ~ 35435399 (+) True G1542071
TU1764763 lncRNA downstream 21955 35431031 ~ 35438214 (+) False G1542057
TU1764762 lncRNA downstream 28534 35437610 ~ 35444970 (+) True G1542057
TU1764784 lncRNA downstream 74931 35484007 ~ 35491707 (+) True LOC118941148
TU1764713 lncRNA downstream 76750 35485826 ~ 35500577 (+) False G1542051
XM_036952546.1 mRNA upstream 52428 35335048 ~ 35348295 (+) False tomm40l
XM_021571765.2 mRNA upstream 52428 35335356 ~ 35348295 (+) False tomm40l
XM_021571766.2 mRNA upstream 52428 35335507 ~ 35348295 (+) False tomm40l
XM_036952545.1 mRNA upstream 52428 35335507 ~ 35348295 (+) True tomm40l
XM_036952544.1 mRNA upstream 76059 35244197 ~ 35324664 (+) False LOC110496082
XR_005037450.1 mRNA downstream 3695 35412771 ~ 35427965 (+) False LOC118941149
XR_005037449.1 mRNA downstream 3695 35412771 ~ 35433941 (+) True LOC118941149
XR_005037437.1 mRNA downstream 32067 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA downstream 32067 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA downstream 32067 35441143 ~ 35504636 (+) False LOC118941148
TU1764676 other upstream 14260 35375244 ~ 35386463 (+) False G1542037
TU1764682 other upstream 14260 35375380 ~ 35386463 (+) True G1542037
TU1764671 other upstream 20717 35375380 ~ 35380006 (+) False G1542037
TU1764613 other upstream 117017 35282603 ~ 35283706 (+) True G1541989
TU1764400 other upstream 502312 34883514 ~ 34898411 (+) True mbpa
TU1764736 other downstream 6112 35415188 ~ 35481348 (+) False G1542052
TU1764728 other downstream 43594 35452670 ~ 35481348 (+) True G1542052
TU1764702 other downstream 69759 35478835 ~ 35502933 (+) False G1542051
TU1764711 other downstream 84519 35493595 ~ 35502933 (+) True G1542051
TU1764796 other downstream 120467 35529543 ~ 35545979 (+) False G1542090

Expression Profile