RNA id: TU1764736


Basic Information

Item Value
RNA id TU1764736
length 2717
RNA type TUCP
GC content 0.42
exon number 4
gene id G1542052
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35400723 ~ 35481348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATATTTGAGGTTTTATTGAGattaaaaaaacatcaaaaaCAAAGTTTGACATTTCACTTTATTACATGAAACTTTCTAAATATTTGCTCTCtctaaaaaaacagaaattcacATTACCCTCAAATGAACGTTGGGGAGGTTTCACAGACCTGTTTCTgatcacagagataaatacataGGTAAAACTTACGGTATGTATCTCTATAGTTCTAACTGCATCTTGAAGAACATTGTATTAATCCAAGCAACAGACCAAGTTGAGAGACCAAGTTGAAAACATGAAACTAACAAGCTTTGGTCACAGGAACATGAATTCATACAAATGATAGATTCTGTTGTGTACCTCAATTACTATTTTTATATTACAGAATTTACGAAGTTGTAATGCAATATGAACTGTTGATATCATGGTCCAGCACATActtaattaaataaacaaataccaGACTAGATGAAGACATGTTTAACATACAATCTGAACATTTACACACAACATCACCCAGAGTCTGTGAAACCAAGCCATCCACTTCAGATGAAAGCCAAGTGATAAAAAACAAGTAAAAAGAGCTGACATAAAAAGTCTTAAAAAGAACTGTGAGGAGTGATGTTGAGTGAATTACAAGGATGATACTGGCAAACAAAACCATCACAATAGTGAATAACCATACATCTTCTAAGAGAAATCTTAAGGATGATGGATTGGAAGTTTACAGGTACCGTCTTGACTCCACAAGGTGAAGTATGCAATGAACCAAGTGAAAGAAAACAACTATGATTATGGtacagtcccaaatggcaccatattccccttatagtgcattacttttgaccagggtccatggggctttggtcaaaagtagtgcactttataggtaaAAGGGTGCCATGATAGTGATACTAACAACATCTATATCGAAACAAAGATAGCTGGGACGGGGAAGTTGTTACATTCAAAGCTTTGGCAATTCAGGCAAATAAAATTAGAAGACATTAGCAATTCGAAAACTACAGAGCTTACGGAgagataaaaaacaaaaaacaaaatacttaaCTAATTCAATTGATTTAAACCATTTGAGCTTATTTGGACAAATCTGCACAGACCAATACAAGATTAACAAACCTCAATGAGAATATCATCAACTATAGGATGTGTATGGAATTAGAAACTGTATCAATGACAGTACCAGTGAAAAAATCTAAATGGGATAAGTCTGAACAGAATAATACAAGATTAACAACTGTCAATGAAATTGTCTTCACATCATTCAAGCTATAGATGACCAAGGAAGTACAAAAAGTACTTTTCTTTTCCACAAGGTTTCCACGAAGGCATCAAACCATAAAAAATAACAGCAAGAGCAAACAGACACATAGGTTAGTTGAGAAAGCAAGAAAGAGCTGGGTAAGAgataataaaatgttaaaaaaacatCTTACAAGATGCTACTGATACTCGTTCAGTCTGTCCGCCCAGGTTCCTTTTACTTTACAACCTTTTTGATTGAGCCAGGCTTTCTGCCCCCCCTCTTAGGAACAACCACTTCTTTTTTCTTAATAGCTGCCACTACCTTACCAGGTTTACTAGCCTTGCCATGACCATCGCGTGGTTTAATTTCCTCTTCTTTGTCATCTTCTACTAGAGAAAAGACTTCATCCTCATTTCTCTGTGTATCTTCATTTTCCTCCTCTGAATCATACGCTGTATAATCAGCGTTCACAGACTTTCTCTTGCCTTTTTGCCTCTGGGCTTGGAAGGCAGCTTCATCGAACACATTTGCTTTACCGTTGGAGCGGCGGTAAAGCCTTACTATTGGAGAAACAGTGCAACCCTGTTTGGCTGAGGGTGAACTGTTGGACCTATCCGTCTCTGCTGCTCTCTTGGCTTTGAAGGAGCCTAAGGGGCGGCCACTCTTTCGCGGGGAATCATCTTTAGCGGGAGGCTTTGAAACTTTAGAAGTTGGAGGTGGGTTCGTCTGTAAGTTGGCACCTCTATCTGTTGATGCCTTGAGTGGACGGCCTCTTCTCCGTGGCTCGGCAGAGGTGGGTGTGGCGGGGGGATCCCTGCGGGGATGGATGCGCGGCCTTCCGAGCGGCTTCCACACTCTAGGTTGGCTTTTCagtatctttctctcctcttcctcctcgggtGACAGGTACTTCCTCGGCctacccaatttttttttttgctgaactTTTTTGGGCCGGCCACGCTCTGCTGAAACAGCATTAGGGTCAACCACTTTACGTGGCCTGCCCCGTGGCTGCTTGTCTAGTACCCTCAGTATCTTAGGTTTCTTGGAGCCTGATCCTTTGGGCCTACCCCTTCCCCTCTTAGGTGGTATGGGGCTGCCATTAGACAAGGCATCGGACTCCTCTTCACTACCAGTGGCATCCATTGCCCCTTCTTTCGACGCCATTGCCCCTTCTTCCGAAGCCGTTGCCCCTTCTTCCGACGCAGTTGCCCCTTCCCCTTCTTCCGACGCAGTTGCCCCTTCCCCTTCTTCCGACGCCGTTGCCCCTTCATCCGACATTGTTGCCCCTTCATCCGACATTGTTGCCCCTTCATCCGACATTGTTGCCCCTTCATCCGACATTGTTGCCCCTTCTTCCGACATTGTTGCCCCTTCTTTCATCTGTTTTCTTGCAACCTGGCTCCTTTCTTTCCTTCCAGCTCACTTCCTAGGAGGTCTTGTGAACTACTTAGGGCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764726 lncRNA upstream 6112 35400723 ~ 35409076 (+) False G1542052
TU1764723 lncRNA upstream 6208 35400723 ~ 35408980 (+) False G1542052
TU1764693 lncRNA upstream 18190 35396381 ~ 35396998 (+) True G1542047
TU1764690 lncRNA upstream 20809 35394126 ~ 35394379 (+) True G1542044
TU1764689 lncRNA upstream 22009 35392954 ~ 35393179 (+) True G1542043
TU1764784 lncRNA downstream 2659 35484007 ~ 35491707 (+) True LOC118941148
TU1764713 lncRNA downstream 4478 35485826 ~ 35500577 (+) False G1542051
TU1764700 lncRNA downstream 5125 35486473 ~ 35502064 (+) False G1542051
TU1764704 lncRNA downstream 11646 35492994 ~ 35500650 (+) False G1542051
TU1764703 lncRNA downstream 11716 35493064 ~ 35502064 (+) False G1542051
XM_036952546.1 mRNA upstream 66893 35335048 ~ 35348295 (+) False tomm40l
XM_021571765.2 mRNA upstream 66893 35335356 ~ 35348295 (+) False tomm40l
XM_021571766.2 mRNA upstream 66893 35335507 ~ 35348295 (+) False tomm40l
XM_036952545.1 mRNA upstream 66893 35335507 ~ 35348295 (+) True tomm40l
XM_036952544.1 mRNA upstream 90524 35244197 ~ 35324664 (+) False LOC110496082
XM_036952626.1 mRNA downstream 408218 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 408263 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 414032 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 489709 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 490331 35971679 ~ 35974902 (+) True LOC110496105
TU1764676 other upstream 28725 35375244 ~ 35386463 (+) False G1542037
TU1764682 other upstream 28725 35375380 ~ 35386463 (+) True G1542037
TU1764671 other upstream 35182 35375380 ~ 35380006 (+) False G1542037
TU1764613 other upstream 131482 35282603 ~ 35283706 (+) True G1541989
TU1764400 other upstream 516777 34883514 ~ 34898411 (+) True mbpa
TU1764711 other downstream 12247 35493595 ~ 35502933 (+) True G1542051
TU1764796 other downstream 48195 35529543 ~ 35545979 (+) False G1542090
TU1764994 other downstream 354488 35835836 ~ 35836617 (+) True G1542253
TU1764995 other downstream 355329 35836677 ~ 35837543 (+) True G1542254
TU1765003 other downstream 364466 35845814 ~ 35846196 (+) True G1542262

Expression Profile