RNA id: TU1764777



Basic Information


Item Value
RNA id TU1764777
length 778
lncRNA type read_through
GC content 0.35
exon number 2
gene id G1542071
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35428037 ~ 35435399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATAGTAGCACAATTTATGGCACAAGAGATTTATTTTTAtgtaatttatttttgttttcagtAAATTATTTTGATACGTACCgtcaggtccaaaattattggcacacttgataaagatgagcaaaaaaagactataaaataaaatttaaaaatacTGAGCTATTGTATGCTAAAAAACATTGgaaaattgttattttattgttcagagaaatacattttgtttaacaagtaatatatatatttttaaagataggggtcaaaattgtcatccctgttttcaatacctcaccttgcgaggataatgacactgagcctttttctaaaatgttttatgagattggagaacacatcgggagggatcttagaccattcctccattcagaatctttccagatccttgatatcctttgtctgtgaatatggactgccctcttcaattcaaaccacaggttttcaatggggttcaagtcaagagactgagatggccattgcaaagtattggttttgtggtcaattaatcATTTATTTGTAGATTATGTGTTCTTGGGGTTAGTGTCTTGCTGGAAGAGCCACTTgcagccaagtttcagcctcctggcagaggcaaccagagcTGCGtgcgaatacccatactaacatacgtATACTGCacacttaatgagtatatactacatagtTAATTTTAATATACTGTACACGAACAGTAtgctttcagttgagcgtactgtCTCTTCActtgtctaccggaagttgatgctgttgctatgcaacctcttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1764726 lncRNA upstream 18961 35400723 ~ 35409076 (+) False G1542052
TU1764723 lncRNA upstream 19057 35400723 ~ 35408980 (+) False G1542052
TU1764693 lncRNA upstream 31039 35396381 ~ 35396998 (+) True G1542047
TU1764690 lncRNA upstream 33658 35394126 ~ 35394379 (+) True G1542044
TU1764689 lncRNA upstream 34858 35392954 ~ 35393179 (+) True G1542043
TU1764762 lncRNA downstream 2211 35437610 ~ 35444970 (+) True G1542057
TU1764784 lncRNA downstream 48608 35484007 ~ 35491707 (+) True LOC118941148
TU1764713 lncRNA downstream 50427 35485826 ~ 35500577 (+) False G1542051
TU1764700 lncRNA downstream 51074 35486473 ~ 35502064 (+) False G1542051
TU1764704 lncRNA downstream 57595 35492994 ~ 35500650 (+) False G1542051
XR_005037450.1 mRNA upstream 72 35412771 ~ 35427965 (+) False LOC118941149
XM_036952546.1 mRNA upstream 79742 35335048 ~ 35348295 (+) False tomm40l
XM_021571765.2 mRNA upstream 79742 35335356 ~ 35348295 (+) False tomm40l
XM_021571766.2 mRNA upstream 79742 35335507 ~ 35348295 (+) False tomm40l
XM_036952545.1 mRNA upstream 79742 35335507 ~ 35348295 (+) True tomm40l
XR_005037437.1 mRNA downstream 5744 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA downstream 5744 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA downstream 5744 35441143 ~ 35504636 (+) False LOC118941148
XR_005037440.1 mRNA downstream 5744 35441143 ~ 35504636 (+) False LOC118941148
XR_005037441.1 mRNA downstream 5744 35441143 ~ 35504636 (+) False LOC118941148
TU1764739 other upstream 2851 35407928 ~ 35425186 (+) False G1542052
TU1764676 other upstream 41574 35375244 ~ 35386463 (+) False G1542037
TU1764682 other upstream 41574 35375380 ~ 35386463 (+) True G1542037
TU1764671 other upstream 48031 35375380 ~ 35380006 (+) False G1542037
TU1764613 other upstream 144331 35282603 ~ 35283706 (+) True G1541989
TU1764728 other downstream 17271 35452670 ~ 35481348 (+) True G1542052
TU1764702 other downstream 43436 35478835 ~ 35502933 (+) False G1542051
TU1764711 other downstream 58196 35493595 ~ 35502933 (+) True G1542051
TU1764796 other downstream 94144 35529543 ~ 35545979 (+) False G1542090
TU1764994 other downstream 400437 35835836 ~ 35836617 (+) True G1542253

Expression Profile