RNA id: TU1765944



Basic Information


Item Value
RNA id TU1765944
length 486
RNA type TUCP
GC content 0.49
exon number 2
gene id G1543128
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35452618 ~ 35504157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCTTTCACCCGCCACAACGTCTGGTTGAAATTCaaatcgctagctagctaaacaattacaACAAAGGCCGATTAAACATCTGGCGACTTTCATGACAAACGATATCTGATAGAAGTGTAGACAGCACCAGCTACGCAAGGATTGTACCAAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1765931 lncRNA downstream 43673 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA downstream 43673 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA downstream 43673 35400728 ~ 35408945 (-) True G1543124
TU1765927 lncRNA downstream 52126 35400254 ~ 35400492 (-) True G1543122
TU1765923 lncRNA downstream 55977 35396366 ~ 35396641 (-) True G1543118
TU1765970 lncRNA upstream 7315 35511472 ~ 35511985 (-) True G1543154
TU1765964 lncRNA upstream 12982 35517139 ~ 35517936 (-) True G1543148
TU1765941 lncRNA upstream 15378 35519535 ~ 35679853 (-) False LOC118941150
TU1765942 lncRNA upstream 15378 35519535 ~ 35522106 (-) True LOC118941150
TU1766086 lncRNA upstream 247874 35752031 ~ 35752372 (-) True G1543265
XM_036952616.1 mRNA downstream 5623 35443262 ~ 35446995 (-) False LOC118941146
XM_036952618.1 mRNA downstream 6256 35443265 ~ 35446362 (-) True LOC118941146
XM_036952619.1 mRNA downstream 12491 35436159 ~ 35440127 (-) True LOC118941147
XM_036952620.1 mRNA downstream 12495 35436159 ~ 35440123 (-) False LOC118941147
XM_036952621.1 mRNA downstream 12496 35436159 ~ 35440122 (-) False LOC118941147
XR_005037451.1 mRNA upstream 15966 35520123 ~ 35679900 (-) False LOC118941150
XM_021571789.2 mRNA upstream 213798 35717955 ~ 35721190 (-) True LOC110496097
XM_021571792.2 mRNA upstream 237195 35741352 ~ 35808049 (-) False LOC110496098
XM_021571791.2 mRNA upstream 237195 35741352 ~ 35808050 (-) True LOC110496098
XM_021571794.2 mRNA upstream 304809 35808966 ~ 35815792 (-) False LOC110496099
TU1765900 other downstream 102956 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 272590 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 314064 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 712979 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1290160 34161927 ~ 34162458 (-) True G1541318
TU1766170 other upstream 506830 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1797351 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2417998 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2643433 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2643433 38147590 ~ 38152232 (-) True LOC110496154

Expression Profile