RNA id: TU1765977


Basic Information

Item Value
RNA id TU1765977
length 272
lncRNA type read_through
GC content 0.38
exon number 2
gene id G1543161
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35477747 ~ 35485186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagacaatctgactacactctgaatttacaagcgcactctggcactccagattgaatttaagaacacacccaaagttgtaaaatgtttagctagtcatttgttatgctaactagctagcaagaggttgcatagcaacatcatcaacttccggtagacaagTGAAGAGacagtacgctcaactgaaagcaTACTGTTCgtgtacagtatactaaaattaactatgtagtatatactcattaagtgtGCAGTATacgtatgttagtatgggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765971 lncRNA downstream 5737 35422332 ~ 35472010 (-) True G1543155
TU1765931 lncRNA downstream 68802 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA downstream 68802 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA downstream 68802 35400728 ~ 35408945 (-) True G1543124
TU1765927 lncRNA downstream 77255 35400254 ~ 35400492 (-) True G1543122
TU1765940 lncRNA upstream 420 35485606 ~ 35502036 (-) False G1543125
TU1765949 lncRNA upstream 7812 35492998 ~ 35500613 (-) True G1543133
TU1765939 lncRNA upstream 8410 35493596 ~ 35501432 (-) False G1543125
TU1765937 lncRNA upstream 8604 35493790 ~ 35502036 (-) True G1543125
TU1765970 lncRNA upstream 26286 35511472 ~ 35511985 (-) True G1543154
XM_036952605.1 mRNA downstream 1641 35471584 ~ 35476106 (-) True LOC118941143
XM_036952606.1 mRNA downstream 2235 35471584 ~ 35475512 (-) False LOC118941143
XM_036952611.1 mRNA downstream 8715 35464510 ~ 35469032 (-) True LOC118941145
XM_036952612.1 mRNA downstream 9286 35464507 ~ 35468461 (-) False LOC118941145
XM_036952613.1 mRNA downstream 9286 35464507 ~ 35468461 (-) False LOC118941145
XM_036952594.1 mRNA upstream 640 35485826 ~ 35488504 (-) False LOC118941141
XM_036952595.1 mRNA upstream 640 35485826 ~ 35488517 (-) True LOC118941141
XM_036952593.1 mRNA upstream 7809 35492995 ~ 35496192 (-) False LOC118941140
XM_036952592.1 mRNA upstream 7809 35492995 ~ 35496785 (-) False LOC118941140
XM_036952591.1 mRNA upstream 7809 35492995 ~ 35497710 (-) False LOC118941140
TU1765900 other downstream 128085 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 297719 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 339193 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 738108 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1315289 34161927 ~ 34162458 (-) True G1541318
TU1765953 other upstream 10136 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 525801 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1816322 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2436969 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2662404 38147590 ~ 38152232 (-) False LOC110496154

Expression Profile