RNA id: TU1764702


Basic Information

Item Value
RNA id TU1764702
length 2593
RNA type TUCP
GC content 0.43
exon number 4
gene id G1542051
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35478835 ~ 35502933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataGGTAAAACTTACGGTATGTATCTCTATAGTTCTAACTGCATCTTGAAGAACATTGTATTAATCCAAGCAACAGACCAAGTTGAGAGACCAAGTTGAAAACATGAAACTAACAAGCTTTGGTCACAGGAACATGAATTCATACAAATTATAGATTCTGTGTGTACCTCAATTACTATTTTTATATTACAGAATTTACGAAGTTGTAATGCAATATGAACTGTTGATATCATGGTCCAGCACATActtaattaaataaacaaataccaGACTAGATGAAGACATGTTTAACATACAATCTGAACATTTACACACAACATCACCCAGAGTCTGTGAAACCAAGCCATCCACTTCAGATGAAAGCCAAGTGATAAAAAACAAGTAAAAAGAGCTGACATAAAAAGTCTTAAAAAGAACTGTGAGGAGTGATGTTGAGTGAATTACAAGGATGATACTGGCAAACAAAACCATCACAATAGTGAATAACCATACATCTTCTAAGAGAAATCTTAAGGATGATGGATTGGAAGTTTACAGGTACCGTCTTGACTCCACAAGGTGAAGTACGCAATGAACCAAGTGAAAGAAAACAACTATGATTATGGtacagtcccaaatggcaccatattccccttatagtgcattacttttgaccagggtccatggggctttggtcaaaagtagtgcactttataggtaaAAGGGTGCCATGATAGTGATACTAACAACATCTATATCGAAACAAAGATAGCTGGGACGGGGAAGTTGTTACATTCAAAGCTTTGGCAATTCAGGCAAATAAAATTAGAAGACATTAGCAATTCGAAAactacagagagataaagaggagagataaaaaacaaaaaacaaaatacttaaCTAATTCAATTGATTTAAACCATTTGAGCTTATTTGGACAAATCTGCACAGACCAATACAAGATTAACAAACCTCAATGAGAATATCATCAACTATAGGATGTGTATGGAATTAGAAACTGTATCAATGACAGTACCAGTGAAAAAATCTAAATGGGATAAGTCTGAACAGAATAATACAAGATTAACAACTGTCAATGAAATTGTCTTCACATCATTCAAGCTATAGATGACCAAGGAAGTACAAAAAGTACTTTTCTTTTCCACAAGGTTTCCACGAAGGCATCAAACCATAAAAAATAACAGCAAGAGCAAACAGACACATAGGTTAGTTGAGAAAGCAAGAAAGAGCTGGGTAAGAgataataaaatgttaaaaaaacatCTTACAAGATGCTACTGATACTCGTTCAGTCTGCTCCGCCCAGGTTCCTTTTACTTTACAACCTTTTTGATTGAGCCAGGCTTTCTGCCCCCCCTCTTAGGAACAACCACTTCTTTTTTCTTAATAGCTGCCACTACCTTACCAGGTTTACTAGCCTTGCCATGACCATCGCGTGGTTTAATTTCCTCTTCTTTGTCATCTTCTACTAGAGAAAAGACTTCATCCTCATTTCTCTGTGTATCTTCATTTTCCTCCTCTGAATCATACGCTGTATAATCAGCGTTCACAGACTTTCTCTTGCCTTTTTGCCTCTGGGCTTGGAAGGCAGCTTCATCGAACACATTTGCTTTACTGTTGGAGCGGCGGTAAAGCCTTACTATTGGAGAAACAGTGCAACCCTGTTTGGCTGAGGGTGAACTGTTGGACCTATCCGTCTCTGCTGCTCTCTTGGCTTTGAAGGAGCCTAAGGGGCGGCCACTCTTTCGCGGGGAATCATCTTTAGCGGGGGGCTTTGAAACTTTAGAAGTTGGAGGTGGGTTCGTCTGTAAGTTGGCACCTCTATCTGTTGATGCCTTGAGTGGACGGCCTCTTCTCCGTGGCTCGGCAGAGGTGGGTGTGGCGGGGGGATCCCTGCGGGGATGGATGCGCGGCCTTCCGAGCGGCTTCCACACTCTAGGTTGGCTTTTCagtatctttctctcctcttcctcctcgggtGACAGGTACTTCCTCGGCctacccaatttttttttttgctgaactTTTTTGGGCCGGCCACGCTCTGCTGAAGCAGCATTAGGGTCAACCACTTTACGTGGCCTGCCCCGTGGCTGCTTGTCTAGTACCCTCAGTATCTTAGGTTTCTTGGAGCCTGATCCTTTGGGCCTACCCCTTCCCCTCTTAGGTGGTATGGGGCTGCCATTAGACAAGGCATCGGACTCCTCTTCACTACCAGTGGCATCCATTGCCCCTTCTTTCGACGCCATTGCCCCTTCTTCCGAAGCCGTTGCCCCTTCTTCCGACGCAGTTGCCCCTTCCCCTTCTTCCGACGCCGTTGCCCCTTCCCCTTCTTCCGACGCCGTTGCCCCTTCATCCGACATTGTTGCCCCTTCATCCGACATTGTTGCCCCTTCATCCGACATTGTTGCCCCTTCTTCCGACATTGTTGCCCCTTCTTTCATCTGTTTTCTTGCAACCTGGCTCCTTTCTTTCCTTCCAGCTCACTTCCTAGGAGGTCTTGTGAACTACTTAGGGCTTCCCACTGTAAAGGTCATATTGAGAAGGttacaatacaaaacaaaatgttcTTTGTGCACGCACCCCTTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764762 lncRNA upstream 33865 35437610 ~ 35444970 (+) True G1542057
TU1764763 lncRNA upstream 40621 35431031 ~ 35438214 (+) False G1542057
TU1764777 lncRNA upstream 43436 35428037 ~ 35435399 (+) True G1542071
TU1764726 lncRNA upstream 69759 35400723 ~ 35409076 (+) False G1542052
TU1764723 lncRNA upstream 69855 35400723 ~ 35408980 (+) False G1542052
TU1764745 lncRNA downstream 2234 35505167 ~ 35508295 (+) True G1542053
TU1764753 lncRNA downstream 9429 35512362 ~ 35518068 (+) False G1542056
TU1764755 lncRNA downstream 13380 35516313 ~ 35517933 (+) False G1542056
TU1764752 lncRNA downstream 13999 35516932 ~ 35517634 (+) False G1542056
TU1764758 lncRNA downstream 13999 35516932 ~ 35518068 (+) True G1542056
XR_005037449.1 mRNA upstream 44894 35412771 ~ 35433941 (+) True LOC118941149
XR_005037450.1 mRNA upstream 50870 35412771 ~ 35427965 (+) False LOC118941149
XM_021571765.2 mRNA upstream 130540 35335356 ~ 35348295 (+) False tomm40l
XM_036952626.1 mRNA downstream 386633 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 386678 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 392447 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 468124 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 468746 35971679 ~ 35974902 (+) True LOC110496105
TU1764735 other upstream 46479 35401837 ~ 35432356 (+) False G1542052
TU1764739 other upstream 53649 35407928 ~ 35425186 (+) False G1542052
TU1764676 other upstream 92372 35375244 ~ 35386463 (+) False G1542037
TU1764682 other upstream 92372 35375380 ~ 35386463 (+) True G1542037
TU1764671 other upstream 98829 35375380 ~ 35380006 (+) False G1542037
TU1764796 other downstream 26610 35529543 ~ 35545979 (+) False G1542090
TU1764994 other downstream 332903 35835836 ~ 35836617 (+) True G1542253
TU1764995 other downstream 333744 35836677 ~ 35837543 (+) True G1542254
TU1765003 other downstream 342881 35845814 ~ 35846196 (+) True G1542262
TU1765023 other downstream 367304 35870237 ~ 35870558 (+) True G1542282

Expression Profile