RNA id: TU1765938


Basic Information

Item Value
RNA id TU1765938
length 1711
lncRNA type read_through
GC content 0.37
exon number 4
gene id G1543125
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35478835 ~ 35502036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCTGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCGATCGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTGTACTTGGTCATCTACTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATTATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctctcctctttatctctctgtagtTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCGTACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765971 lncRNA downstream 6825 35422332 ~ 35472010 (-) True G1543155
TU1765931 lncRNA downstream 69890 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA downstream 69890 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA downstream 69890 35400728 ~ 35408945 (-) True G1543124
TU1765927 lncRNA downstream 78343 35400254 ~ 35400492 (-) True G1543122
TU1765970 lncRNA upstream 9436 35511472 ~ 35511985 (-) True G1543154
TU1765964 lncRNA upstream 15103 35517139 ~ 35517936 (-) True G1543148
TU1765941 lncRNA upstream 17499 35519535 ~ 35679853 (-) False LOC118941150
TU1765942 lncRNA upstream 17499 35519535 ~ 35522106 (-) True LOC118941150
TU1766086 lncRNA upstream 249995 35752031 ~ 35752372 (-) True G1543265
XM_036952605.1 mRNA downstream 2729 35471584 ~ 35476106 (-) True LOC118941143
XM_036952606.1 mRNA downstream 3323 35471584 ~ 35475512 (-) False LOC118941143
XM_036952611.1 mRNA downstream 9803 35464510 ~ 35469032 (-) True LOC118941145
XM_036952612.1 mRNA downstream 10374 35464507 ~ 35468461 (-) False LOC118941145
XR_005037451.1 mRNA upstream 18087 35520123 ~ 35679900 (-) False LOC118941150
XM_021571789.2 mRNA upstream 215919 35717955 ~ 35721190 (-) True LOC110496097
XM_021571792.2 mRNA upstream 239316 35741352 ~ 35808049 (-) False LOC110496098
XM_021571791.2 mRNA upstream 239316 35741352 ~ 35808050 (-) True LOC110496098
XM_021571794.2 mRNA upstream 306930 35808966 ~ 35815792 (-) False LOC110496099
TU1765900 other downstream 129173 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 298807 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 340281 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 739196 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1316377 34161927 ~ 34162458 (-) True G1541318
TU1766170 other upstream 508951 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1799472 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2420119 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2645554 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2645554 38147590 ~ 38152232 (-) True LOC110496154

Expression Profile