RNA id: TU1764745


Basic Information

Item Value
RNA id TU1764745
length 632
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1542053
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35505167 ~ 35508295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTACCTCTATATTTTGTTCTCATGTCTCCATAGACAGGAAAAAGATTGATGTATGGAGATTAAGGGAGATAAGAGGTATGTGGTAACATGAGTGATGGAAGCAGCCTGAAtaagaaaaatatatacaaattgtatgtgtgtgtgtgcgcatgtgcatgACCCTGTACGTGCCTCTGTGTGGGATTTGGAGAAAAACAGGGAGAGAGCTTGAGAGACAATCCCAGAGAGACTGTGTGTTGAACCCGCTGCCCCCTAATACCCCTACCTGCTCCCTGCATGCTTTGCCATGGTTACGAGACAGTTAATGTGTTTTTCAGCAGGGGTGAGCTGGGTACTAatgtgtctcagtctgtctcctcAGCAAATGGCACAATCAATATCAACTGTCCCAGGATGCACCACCACTAGCAGAGGGCCAGGAAAACCACCAAGCTCCCTGCAAGGCTGAATAATcctattggatttcctgttatcaacctattgcctgatatCCCGGATGACATTAcaagccttttccctgcctgtactattgcctttttggacccctgtgtatgaccttctgcctgcccctggacccagctacctgcctcctcatgTGGTCCTTtaccaataaacacctgctgcgccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764700 lncRNA upstream 3103 35486473 ~ 35502064 (+) False G1542051
TU1764703 lncRNA upstream 3103 35493064 ~ 35502064 (+) False G1542051
TU1764710 lncRNA upstream 3103 35493064 ~ 35502064 (+) False G1542051
TU1764704 lncRNA upstream 4517 35492994 ~ 35500650 (+) False G1542051
TU1764708 lncRNA upstream 4517 35493064 ~ 35500650 (+) False G1542051
TU1764753 lncRNA downstream 4067 35512362 ~ 35518068 (+) False G1542056
TU1764755 lncRNA downstream 8018 35516313 ~ 35517933 (+) False G1542056
TU1764752 lncRNA downstream 8637 35516932 ~ 35517634 (+) False G1542056
TU1764758 lncRNA downstream 8637 35516932 ~ 35518068 (+) True G1542056
TU1764768 lncRNA downstream 10158 35518453 ~ 35518827 (+) True G1542062
XR_005037437.1 mRNA upstream 531 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA upstream 531 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA upstream 531 35441143 ~ 35504636 (+) False LOC118941148
XR_005037440.1 mRNA upstream 531 35441143 ~ 35504636 (+) False LOC118941148
XR_005037441.1 mRNA upstream 531 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 381271 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 381316 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 387085 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 462762 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 463384 35971679 ~ 35974902 (+) True LOC110496105
TU1764702 other upstream 2234 35478835 ~ 35502933 (+) False G1542051
TU1764711 other upstream 2234 35493595 ~ 35502933 (+) True G1542051
TU1764736 other upstream 23819 35415188 ~ 35481348 (+) False G1542052
TU1764728 other upstream 23819 35452670 ~ 35481348 (+) True G1542052
TU1764735 other upstream 72811 35401837 ~ 35432356 (+) False G1542052
TU1764796 other downstream 21248 35529543 ~ 35545979 (+) False G1542090
TU1764994 other downstream 327541 35835836 ~ 35836617 (+) True G1542253
TU1764995 other downstream 328382 35836677 ~ 35837543 (+) True G1542254
TU1765003 other downstream 337519 35845814 ~ 35846196 (+) True G1542262
TU1765023 other downstream 361942 35870237 ~ 35870558 (+) True G1542282

Expression Profile