RNA id: TU1764753


Basic Information

Item Value
RNA id TU1764753
length 5707
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1542056
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35512362 ~ 35518068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgtgagtgctacgggtctgtagtcatttaggcaggttcccttcgtgttcttgggcacagggactatggtggtctgcttgaagcatgttggtattacagactcaatcagggacatgttgaaatgtcagtgaagacacctgccagttggtcagcacatgccccgagcacacatcctggtaatccgtctggccccgcagccttgtgtatgttgacctgtttaaaggtcttactcacgtcggctacggagagcgtgatcacacagtcatccggggaacagctgatgctctcatgcatgcctcagtgttgcttgcctcgaagtgagcatagaagtgatttagctcgtctggtaggctcatgtcactgggcagctctcggctgtgcttccctttgtagtctgtaatagtttgcaagccctgccacatccaacgagcatcggagccggtgtagtatgattcaatcttagccctgtattgacgctttgcctgtttgatggttcgtcgcagggcatagcggtatttcttgtaagcttccggattagagtcccgcaccttgaaagcgtcagctctaccctttagctcagtgcgaatgttgcctgtaatcgatggcttctggttggggtatgtacctaccgtcactgtggggacgacgtcctcaatgcattTATTGATAAacccagtgactgatgtggtgaattcctcaatgtcattggaAAAATCCCGGAagatgttccagtctgtgatagcaaagcagtcctgtagtttagcatctgcttcatctgacaatttttttatagaccgagatactggtgcttcctgctttaattttagcttgtaagcaggaatcaggaggatagagttgggGTCGGATTtatcaaatggagggcgagggagagctttgtacgcatctctgtgtgtggagtacaggtgatctagatttttttcccctctggttgcacatttaacatgttgatagagatttggtagaactgattttagtttccctgcattaaagtctccagccactaggagcgccgcctctgggtgagtggtttcctgtttgcttatttccttatacagctgactgagtggggtcttagtgccagcatctgtctgtggtggtaaataaacagctacGTAAAGTATagtgagaactctctaggcaagtagtgtggcctgcagtttatcacaatatatagagacttccttagatttcgtgcaccagctgttgtttacaaatgtcctgatatccagaagctcttttcttccgtaatatacggttgcagaaacactatgtacaaaataatttacaaattcgccacataatagcacaattggttaggagaccgtaaaacggtGGCCATCTCCTCTGGCGCCATCACCTaaaaacctctcactcaacgtcaacaaaacaaaggagaagaTCGTggccttcaggaaacagcagagggagcaaccccctatccacatctataggacagtagtggagaaggtggaaagttaagttcctcggcatacacattactgacaaactgaaattgtctacccacacagacagtgtggtgaagaaggcgcaacagtgtctctttaacctcaggaggctgatgaaatttgtcttgtcacctacAAACATACtcttttacagatgtacaattgagagcatcctgttgggctgtatcaccgcctagtaCTGCAACTGCGCCGCCCACAACCGCTGGGTTCTCCagatgtctctgaatgtccttgagtggcccagcctgaaCCCGGACTTGCGCCccattgaacatctctggagagacctgaatatagctgtgcagcgatgctccccattgaacccgacagagcttgacaagatctgcagagaagaatggaagaaactccccaaatacaggtgtgccaagcttgtagcatcatacccaagaagactcaaggctgtaatcgctgctaaaggtgcttcaacaaagtactgaataaagggtctgaatacttatgtaaatgtgatatttcacttttgtattttttatacatttgcaaaaaaaatcaaacaacctgtttttgctttgtcattatggggtattgtgtgtagattgatgaggtaaaaaaaactattaaatccattttagaaaaatgctgtaacgtaacaaaatgtggaaaaagtgaaggtgtctgagtactttccaaatgcactgtatgtcaccATATAGCTCagcatttgtattatttattttatagtattATTTTCTTATCTTTATGAacttacacatatggaatcatgtagtaaacaaaataagtgttaaacaaatcaatactttgatgacagctttgcacactcatagcattctctcaaccagcttcccctggaatgcatttccaacagtcttgaaggcgttcccacatatgttgtgcacttgttggctgcttttccttcactctgcggtccaactcatcccaaaccatctaaattgggttgaggtcgggtgattgtggatgccaggtcatctaatgcagcactccatcactctcccccatttctccttcacccaaatccagatagctgattttctgaaagagctgcaaaatctggacccctacaaatcagccgggctagacaatctgggccctctctttctaaaatgagctgccaaaattgttgcaacccctattactagcctgttcaacctctctttcatattgtctgagattcccaaagattggaaagctgccacggtcatccccctgttcaaagggggagacactctagacccaaactgctacagacctgtatctatcctaccctgcatttctaaggtcttcgaaagcgaagttaacaaacagattaccgaccatttcgaatcccaccgtaccttctcctctatgcaatctggtttcagagctggtgcacctcagccatgctcaaagTACTAAAAGTACTAAAagtactaaatgatatcataacctccatcgataagagacaaggctttcgactctgtcaatcaccacattcttatcggcagactcaacagccttggtttctcaaatgattgcctcgcctggttcaccaactactcttctgatagagttcagtgtgtcaaatcggagggcttgttgtccggacctctggcagtcgctatgagggtgccacagggttcaattctcgggccgactctcttctctgtatacatcaatgatgtccaAGATGTAAAACTTCTTGGTgaaagggggcagtattttcaagtccagatgaaatgcatgcccaaattcaactgcctgctactcatccccagaaaataagatatgcatattattagtattgaatagaaaacactctgaagtttctaaaacggtttgaatcatgtctgtgagtaaaacagaacttatgtagcaggcgaaacccttAGGAAAAAACattcagatttttattttttgaggtcactctcttttcaatacgttttcattgggaatcgagatttctaagggaccttcatgcagttcctaccgcttccaatggatgtcaccagtctttagaaattggttgaggtttttcctttgtgtaatgaagaagtagccctgttcaaaacgagggtcacttcaagtgtactgttagatagaggcgcgtgaccagaaaggtagcatcagtttgttttcttcctgtatggaaaacagatcatcccgtcttcaattttatcgattatttactttaaaaaatacctaaagttgtattacaaaagtagtttgaaatgttttggcaaagtttacaggtaacttttgacatatattgtagtgacgttgcgcaatttggaacaggtgtttttctggatcaaacgcgctaaataaatggacattttggatatatatcgacggaactaatcgaacaaaaggaccctTTGTTTATTGAGGTGCtaccctcagataatagcattgtttgcttttgccgaaaagcatttttgaaatgttggctggattcacaacacgtgtagctttaatttggtatcttacatatgtgatttcatgaaagttagatttttatagtaatttcattttgttccataaagattatttttagatccaaaatacctccgtttgtttgtcgcgttatgttcagaaatccacaggaaagagcggtcatgacaacgcagacgaaaattccaaatagtttccataatgtccacagaaacatgtcaaacgttttttataatcaaatcctcaggttgtttttaaaatatataatcgataatatattaaccacaaatgtctttcacagtaggagagaggaaaacaatggctgtccaaattctgttgcgcaagcaaaactcatgtgaccacttgacgcaatgttatcgttctggctcatttttcaaaataaaagcctgaaactatgtctgaagactgttgacaccttgaggaagcgataggaaaaggaatctggttcatatccctttaaatccagcaaagggaggctatggaacatggagttttcaaaatagaagccacttcctgtttggattttcctcagggtttcgcctgcaatatcagttatgttatactcacagacaatattttgacaggtttggaaactttagagtgttttctatccaattctaataataatatgcatatattagcaactgagactgagagctggccgtttacaatgggcaccttttcatccaagctactcaatactgcccctgcagccataaaaagttacatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctagtaaaactgacaatcctaccgatcctcgtctttggcgatgtcatttacaaaatagcctccaacaatctactcaacaaattggatgcagtctatcacagttccATCTGTTctgtcaccaaaaccccatatactacccaccactgcgacctgtacgctctcgttgcctggcccttgcttcatactcgtcgccaaacccactggctccaggtcatctacaagtatctgctaggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcgctacagatatatctcactggtcacccccatagccaattcttcctttggctgcctttccttccagttctctgctaccaatgacaggaacgaactacaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagattaatgcacctgtacatagcccacctataatttagcccaaaaaactacctctttccctactgtattttatttattcatttattttgctcctttgcaccccattatttttatttctactttgcacattctcccattgcaaatctaccattccagtgttttacttgctatattgtatttactttgccaccatggcctttttgcctttacctcccttatctcacctcatttgctcacatcgtatataaacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatgtgtcgaactcaacttgcctacctggttaaataaaggtgaaaaaataaaaagaaattgcacaaaggagatgtcctaaccgacttgtcaaaactatagtttgttaacaagaaatttgtggttgaaaaactaattttaatgactccaacctaagtgaatgtaaacatccga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764745 lncRNA upstream 4067 35505167 ~ 35508295 (+) True G1542053
TU1764703 lncRNA upstream 10298 35493064 ~ 35502064 (+) False G1542051
TU1764710 lncRNA upstream 10298 35493064 ~ 35502064 (+) False G1542051
TU1764704 lncRNA upstream 11712 35492994 ~ 35500650 (+) False G1542051
TU1764768 lncRNA downstream 385 35518453 ~ 35518827 (+) True G1542062
TU1764749 lncRNA downstream 1338 35519406 ~ 35520066 (+) True G1542055
TU1764799 lncRNA downstream 11475 35529543 ~ 35606179 (+) False G1542090
TU1764801 lncRNA downstream 16831 35534899 ~ 35568612 (+) False G1542090
TU1764800 lncRNA downstream 17261 35535329 ~ 35597029 (+) True G1542090
XR_005037444.1 mRNA upstream 7726 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 371498 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 371543 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 377312 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 452989 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 453611 35971679 ~ 35974902 (+) True LOC110496105
TU1764702 other upstream 9429 35478835 ~ 35502933 (+) False G1542051
TU1764711 other upstream 9429 35493595 ~ 35502933 (+) True G1542051
TU1764736 other upstream 31014 35415188 ~ 35481348 (+) False G1542052
TU1764728 other upstream 31014 35452670 ~ 35481348 (+) True G1542052
TU1764739 other upstream 87176 35407928 ~ 35425186 (+) False G1542052
TU1764796 other downstream 11475 35529543 ~ 35545979 (+) False G1542090
TU1764994 other downstream 317768 35835836 ~ 35836617 (+) True G1542253
TU1764995 other downstream 318609 35836677 ~ 35837543 (+) True G1542254
TU1765003 other downstream 327746 35845814 ~ 35846196 (+) True G1542262
TU1765023 other downstream 352169 35870237 ~ 35870558 (+) True G1542282

Expression Profile