RNA id: TU1764830



Basic Information


Item Value
RNA id TU1764830
length 1004
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1542109
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35558062 ~ 35563652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caacattagctcagtctatctcactgcacaacagagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggtgagtacagactgcagagtgaggcacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacactaggtcagtctatctcacagaacaggtagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggtgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttttataggcgcgtacagactgcaaagtgaagtacatatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgtgtACAGACTGCAaaatgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaaaattaggtcagtctatctcacagcacagggagctgattccgataggtgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1764822 lncRNA upstream 13719 35541459 ~ 35544343 (+) True G1542101
TU1764749 lncRNA upstream 37996 35519406 ~ 35520066 (+) True G1542055
TU1764768 lncRNA upstream 39235 35518453 ~ 35518827 (+) True G1542062
TU1764758 lncRNA upstream 39994 35516932 ~ 35518068 (+) True G1542056
TU1764752 lncRNA upstream 40428 35516932 ~ 35517634 (+) False G1542056
TU1764839 lncRNA downstream 26634 35590286 ~ 35591065 (+) True G1542114
TU1764843 lncRNA downstream 41950 35605602 ~ 35613417 (+) True G1542117
TU1764818 lncRNA downstream 67402 35631054 ~ 35641177 (+) True G1542097
TU1764821 lncRNA downstream 79566 35643218 ~ 35649719 (+) True G1542100
TU1764849 lncRNA downstream 88515 35652167 ~ 35652814 (+) True G1542123
XR_005037444.1 mRNA upstream 53426 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 325914 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 325959 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 331728 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 407405 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 408027 35971679 ~ 35974902 (+) True LOC110496105
TU1764796 other upstream 12083 35529543 ~ 35545979 (+) False G1542090
TU1764702 other upstream 55129 35478835 ~ 35502933 (+) False G1542051
TU1764711 other upstream 55129 35493595 ~ 35502933 (+) True G1542051
TU1764736 other upstream 76714 35415188 ~ 35481348 (+) False G1542052
TU1764994 other downstream 272184 35835836 ~ 35836617 (+) True G1542253
TU1764995 other downstream 273025 35836677 ~ 35837543 (+) True G1542254
TU1765003 other downstream 282162 35845814 ~ 35846196 (+) True G1542262
TU1765023 other downstream 306585 35870237 ~ 35870558 (+) True G1542282
TU1765069 other downstream 397549 35961201 ~ 35963705 (+) True G1542324

Expression Profile