RNA id: TU1764843



Basic Information


Item Value
RNA id TU1764843
length 227
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1542117
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35605602 ~ 35613417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaggtgaGTACAGagtgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1764813 lncRNA upstream 6344 35542454 ~ 35599258 (+) True G1542093
TU1764800 lncRNA upstream 8573 35535329 ~ 35597029 (+) True G1542090
TU1764839 lncRNA upstream 14537 35590286 ~ 35591065 (+) True G1542114
TU1764801 lncRNA upstream 36990 35534899 ~ 35568612 (+) False G1542090
TU1764830 lncRNA upstream 41950 35558062 ~ 35563652 (+) True G1542109
TU1764818 lncRNA downstream 17637 35631054 ~ 35641177 (+) True G1542097
TU1764821 lncRNA downstream 29801 35643218 ~ 35649719 (+) True G1542100
TU1764849 lncRNA downstream 38750 35652167 ~ 35652814 (+) True G1542123
TU1764852 lncRNA downstream 40163 35653580 ~ 35655697 (+) True G1542125
TU1764890 lncRNA downstream 88203 35701620 ~ 35708671 (+) True G1542158
XR_005037444.1 mRNA upstream 100966 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 276149 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 276194 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 281963 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 357640 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 358262 35971679 ~ 35974902 (+) True LOC110496105
TU1764796 other upstream 59623 35529543 ~ 35545979 (+) False G1542090
TU1764702 other upstream 102669 35478835 ~ 35502933 (+) False G1542051
TU1764711 other upstream 102669 35493595 ~ 35502933 (+) True G1542051
TU1764736 other upstream 124254 35415188 ~ 35481348 (+) False G1542052
TU1764994 other downstream 222419 35835836 ~ 35836617 (+) True G1542253
TU1764995 other downstream 223260 35836677 ~ 35837543 (+) True G1542254
TU1765003 other downstream 232397 35845814 ~ 35846196 (+) True G1542262
TU1765023 other downstream 256820 35870237 ~ 35870558 (+) True G1542282
TU1765069 other downstream 347784 35961201 ~ 35963705 (+) True G1542324

Expression Profile