RNA id: TU1765003


Basic Information

Item Value
RNA id TU1765003
length 383
RNA type TUCP
GC content 0.64
exon number 1
gene id G1542262
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35845814 ~ 35846196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaacccaaccaagccgcactgcttcttaacacagcccgcatccaacccggaagccagccgcaccaatgcgccggaggaaacaccgtgcacctggccaccttggttagtgcacactgcgcccagcccgctacaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacgacctcccggtcgcggccggttacgacagagcctgggcgcgtacccagggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764997 lncRNA upstream 7034 35838455 ~ 35838780 (+) True G1542256
TU1764996 lncRNA upstream 7618 35837970 ~ 35838196 (+) True G1542255
TU1764993 lncRNA upstream 10574 35835034 ~ 35835240 (+) True G1542252
TU1764992 lncRNA upstream 10955 35834199 ~ 35834859 (+) True G1542251
TU1764991 lncRNA upstream 11687 35833514 ~ 35834127 (+) True G1542250
TU1765009 lncRNA downstream 4274 35850470 ~ 35852174 (+) True G1542268
TU1765010 lncRNA downstream 8539 35854735 ~ 35855758 (+) True G1542269
TU1765012 lncRNA downstream 10807 35857003 ~ 35857580 (+) True G1542271
TU1765013 lncRNA downstream 11549 35857745 ~ 35858255 (+) True G1542272
TU1765014 lncRNA downstream 12477 35858673 ~ 35859234 (+) True G1542273
XR_005037444.1 mRNA upstream 341178 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 43370 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 43415 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 49184 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 124861 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 125483 35971679 ~ 35974902 (+) True LOC110496105
TU1764995 other upstream 8271 35836677 ~ 35837543 (+) True G1542254
TU1764994 other upstream 9197 35835836 ~ 35836617 (+) True G1542253
TU1764796 other upstream 299835 35529543 ~ 35545979 (+) False G1542090
TU1764702 other upstream 342881 35478835 ~ 35502933 (+) False G1542051
TU1764711 other upstream 342881 35493595 ~ 35502933 (+) True G1542051
TU1765023 other downstream 24041 35870237 ~ 35870558 (+) True G1542282
TU1765069 other downstream 115005 35961201 ~ 35963705 (+) True G1542324
TU1765134 other downstream 230465 36076661 ~ 36088357 (+) False LOC110496111
TU1765133 other downstream 240580 36086776 ~ 36091606 (+) True LOC110496111
TU1766867 other downstream 918098 36764294 ~ 36765233 (+) True G1544007

Expression Profile