RNA id: TU1765023


Basic Information

Item Value
RNA id TU1765023
length 322
RNA type TUCP
GC content 0.64
exon number 1
gene id G1542282
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35870237 ~ 35870558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagtaatgatccatggcccggagcctctaGTGACGacccacggtccggttcctctggcgacaatccacggtccggagcttccggcgatgatccacggtccggagatTCTGGTGATGATCcacagtccggagcttccggcgacgatccacggtccagagcttctggcgacgatccacggtctggAGCATCCGGcaacgatctacggtccggagcaTCTAgcaacgatccacggtccggtccctccggcgacgatccacggtccggagcatCCAgcaacgatccacggtccggttcctccggcaacgacccacggtccggttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765022 lncRNA upstream 1249 35868787 ~ 35868988 (+) True G1542281
TU1765021 lncRNA upstream 1836 35868201 ~ 35868401 (+) True G1542280
TU1765020 lncRNA upstream 2499 35867476 ~ 35867738 (+) True G1542279
TU1765019 lncRNA upstream 3471 35866532 ~ 35866766 (+) True G1542278
TU1765018 lncRNA upstream 5012 35864658 ~ 35865225 (+) True G1542277
TU1765024 lncRNA downstream 1043 35871601 ~ 35874188 (+) True G1542283
TU1765039 lncRNA downstream 16602 35887160 ~ 35887410 (+) True G1542295
TU1765040 lncRNA downstream 17736 35888294 ~ 35888508 (+) True G1542296
TU1765036 lncRNA downstream 38595 35909153 ~ 35940375 (+) True G1542292
TU1765123 lncRNA downstream 182320 36052878 ~ 36058125 (+) True G1542370
XR_005037444.1 mRNA upstream 365601 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 19008 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 19053 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 24822 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 100499 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 101121 35971679 ~ 35974902 (+) True LOC110496105
TU1765003 other upstream 24041 35845814 ~ 35846196 (+) True G1542262
TU1764995 other upstream 32694 35836677 ~ 35837543 (+) True G1542254
TU1764994 other upstream 33620 35835836 ~ 35836617 (+) True G1542253
TU1764796 other upstream 324258 35529543 ~ 35545979 (+) False G1542090
TU1764702 other upstream 367304 35478835 ~ 35502933 (+) False G1542051
TU1765069 other downstream 90643 35961201 ~ 35963705 (+) True G1542324
TU1765134 other downstream 206103 36076661 ~ 36088357 (+) False LOC110496111
TU1765133 other downstream 216218 36086776 ~ 36091606 (+) True LOC110496111
TU1766867 other downstream 893736 36764294 ~ 36765233 (+) True G1544007
TU1766999 other downstream 992365 36862923 ~ 36863183 (+) True G1544137

Expression Profile