RNA id: TU1765039


Basic Information

Item Value
RNA id TU1765039
length 251
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1542295
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35887160 ~ 35887410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccaatactccttagccggcccaaaATAATGGAATgatctaccgtatcaaaagctttggccaagtcaataaaaatagcagcacaacattgcttagaatcaatggcaatggtgacatcattgaggacctttaaggttgcagtgatacgtccataacctgagcggaaaccagattgcataccagagagaatactatagacatcaagaaagtcagtcagttgattatgacaagtttttccaacacttttgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765024 lncRNA upstream 12972 35871601 ~ 35874188 (+) True G1542283
TU1765022 lncRNA upstream 18172 35868787 ~ 35868988 (+) True G1542281
TU1765021 lncRNA upstream 18759 35868201 ~ 35868401 (+) True G1542280
TU1765020 lncRNA upstream 19422 35867476 ~ 35867738 (+) True G1542279
TU1765019 lncRNA upstream 20394 35866532 ~ 35866766 (+) True G1542278
TU1765040 lncRNA downstream 884 35888294 ~ 35888508 (+) True G1542296
TU1765036 lncRNA downstream 21743 35909153 ~ 35940375 (+) True G1542292
TU1765123 lncRNA downstream 165468 36052878 ~ 36058125 (+) True G1542370
TU1765144 lncRNA downstream 213825 36101235 ~ 36101463 (+) True G1542389
TU1765146 lncRNA downstream 216456 36103866 ~ 36104133 (+) True G1542391
XR_005037444.1 mRNA upstream 382524 35441143 ~ 35504636 (+) False LOC118941148
XM_036952626.1 mRNA downstream 2156 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA downstream 2201 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA downstream 7970 35895380 ~ 35908363 (+) True LOC110496101
XM_036952632.1 mRNA downstream 83647 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA downstream 84269 35971679 ~ 35974902 (+) True LOC110496105
TU1765023 other upstream 16602 35870237 ~ 35870558 (+) True G1542282
TU1765003 other upstream 40964 35845814 ~ 35846196 (+) True G1542262
TU1764995 other upstream 49617 35836677 ~ 35837543 (+) True G1542254
TU1764994 other upstream 50543 35835836 ~ 35836617 (+) True G1542253
TU1764796 other upstream 341181 35529543 ~ 35545979 (+) False G1542090
TU1765069 other downstream 73791 35961201 ~ 35963705 (+) True G1542324
TU1765134 other downstream 189251 36076661 ~ 36088357 (+) False LOC110496111
TU1765133 other downstream 199366 36086776 ~ 36091606 (+) True LOC110496111
TU1766867 other downstream 876884 36764294 ~ 36765233 (+) True G1544007
TU1766999 other downstream 975513 36862923 ~ 36863183 (+) True G1544137

Expression Profile