RNA id: TU1766191


Basic Information

Item Value
RNA id TU1766191
length 760
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1543364
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36042400 ~ 36043159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactctccttcttggtcaaatagcccttacccagtcttgaggtgtgttttgggtcattgtcctgttgaaaaacaaatgatagtgggactaagcgcaaaccagatgggatggcatattactgcaaaatgctgtggtagccatgctggtttagtgcgcctcgaattctaaataaatcactgactgtcaccagcaaagcacccccacacctcctcctccatgcttgacggtgggaaccacacatgcggagatcatccggtgtctgttacttgaactctgaagcatttatttaggctgcaatttctgaggctggtaactccaaagaacttatcctctgcagcagaagtaactctgggtcttcctttccagtggcggtgctcatgagagccagtttcatcatattgcttgatggtttttgtgactgcacttgaagaaacattcaaagttcttgaaattttacagattactttaagacatgaatgtcagtcaatgatggactgttgtttctcttcgctcatttgagctgttcttaccataatatggacttggtcttctaccaaatagggctatcttctgtataccacccctaccttgtcacaacacaactgattggctcaaacgcattaagaaggaaagaaattccacaaattaacaacctgttaattgaaatgcattccaggtgactacctcatgaggctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1766190 lncRNA downstream 861 36041134 ~ 36041539 (-) True G1543363
TU1766187 lncRNA downstream 4140 36038049 ~ 36038260 (-) True G1543360
TU1766166 lncRNA downstream 7562 36007637 ~ 36034838 (-) True G1543343
TU1766144 lncRNA downstream 69545 35971758 ~ 35972855 (-) True G1543321
TU1766118 lncRNA downstream 156506 35885664 ~ 35885894 (-) True G1543297
TU1766212 lncRNA upstream 25021 36068180 ~ 36074235 (-) True LOC110496109
TU1766224 lncRNA upstream 61120 36104279 ~ 36104504 (-) True G1543390
TU1766269 lncRNA upstream 149589 36192748 ~ 36193845 (-) True G1543428
TU1766268 lncRNA upstream 153180 36196339 ~ 36200850 (-) True ext1b
TU1766450 lncRNA upstream 272680 36315839 ~ 36316263 (-) True G1543605
XM_021571800.2 mRNA downstream 61452 35975293 ~ 35980948 (-) True LOC110496104
XM_036952629.1 mRNA downstream 70683 35918293 ~ 35971717 (-) True LOC110496103
XM_036952631.1 mRNA downstream 70788 35918293 ~ 35971612 (-) False LOC110496103
XM_036952633.1 mRNA downstream 124261 35912005 ~ 35918139 (-) False LOC110496102
XM_036952637.1 mRNA upstream 28536 36071695 ~ 36076984 (-) False LOC110496109
XM_021571809.2 mRNA upstream 28536 36071695 ~ 36077299 (-) False LOC110496109
XM_021571810.2 mRNA upstream 40975 36084134 ~ 36100917 (-) True LOC110496110
XM_036952640.1 mRNA upstream 152976 36196135 ~ 36308398 (-) False ext1b
XM_021571815.2 mRNA upstream 293356 36336515 ~ 36453812 (-) False samd12
TU1766170 other downstream 29714 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 538243 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 545418 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 692738 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 862372 35175306 ~ 35180028 (-) True LOC110496081
TU1767721 other upstream 1258349 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 1878996 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2104431 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2104431 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 2122091 38165250 ~ 38214049 (-) True G1546053

Expression Profile