RNA id: TU1766269


Basic Information

Item Value
RNA id TU1766269
length 1070
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1543428
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36192748 ~ 36193845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGCAGGATTTATAGTGCCATAGAATTCCTAAAGTTAATCAGACATTGTGATAATCATAAAGTCCAGAAGATACTGCGTTGACACGTAAACATCAAGCAGCCAACCACACATGAAAAGCAGAAGCACAAAACTCTTTCGTTTCACTACACTGTACCATGTTCATGGTGCAAAAGAGAAcagatctatgtgtgtgtgtgtgtggggggggggggggcTGGAGACCTCAATCTAGCTAGCAGTGATttcatttaaaaccttttttcaGCAATGTGCCTTATGATTTGTTTTATGGTATTTTTGCACAGATCTGTGCTCTTCTTCACCACAAACATGTCATCATGTATATCATTTGAGTTAAAATGGTTTAGGAATGTATAAACACATCTTGAAGGAAATCGAACTTCAAAACCACTCTAAATGGGTAAATGTAGTATTTGTCAAATATCTTAGGATATTAAATAAACTATAACTCTTAAAGTCCTCTTAATAACCATGTTGTAAGCGACAACTACACTCATCGGACAGTTTATTATGTACAATGAATGTACCGCCATTCAATCAGCAGCAACTGCATGATGCCATCGCGTCAGCATGTACTaaaatccctgtggaacgtttccaGACAACTTGTAGAATACGCCAAAGAATTCAggttgttctggaggcaaaggaggGTCCGACCTGTTACtaaatgggtgtacctaataaactgtacgGTGAGTGTATATCAGCATTTCTCCATCGCAAAACTTCTCTTTGTTCTTCTTTGCTTTCTTCACCCTCTTTTTCTGGGACTGAGGGTTGTATATTGCAAAAGCCTGCATTTCTAAAGTGCAGCGTCAGCATCAGCCTCAGAGGGACCCTGTCAGATATCCAGTTAACAACCATGTCTTccagtctgtggtgtgtgtgtgtatgtatgtatgcgcgCCTgcgcctgtgtgtctctctctctgtgtcgccgTGTTTGCCGTTCAACTCCTAACAGCCAGCATGGAGTTTATCTCCCAGATGAGGTTTCTGAGCTGGTCCATTATCTGCTTCAGTTGTTGGTTCTTCTGTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1766224 lncRNA downstream 88244 36104279 ~ 36104504 (-) True G1543390
TU1766212 lncRNA downstream 118513 36068180 ~ 36074235 (-) True LOC110496109
TU1766191 lncRNA downstream 149589 36042400 ~ 36043159 (-) True G1543364
TU1766190 lncRNA downstream 151209 36041134 ~ 36041539 (-) True G1543363
TU1766187 lncRNA downstream 154488 36038049 ~ 36038260 (-) True G1543360
TU1766268 lncRNA upstream 2494 36196339 ~ 36200850 (-) True ext1b
TU1766450 lncRNA upstream 121994 36315839 ~ 36316263 (-) True G1543605
TU1766485 lncRNA upstream 174087 36367932 ~ 36369697 (-) True G1543639
TU1766573 lncRNA upstream 283288 36477133 ~ 36477477 (-) True G1543727
TU1766585 lncRNA upstream 291945 36485790 ~ 36486155 (-) True G1543739
XM_021571810.2 mRNA downstream 91831 36084134 ~ 36100917 (-) True LOC110496110
XM_021571809.2 mRNA downstream 115449 36071695 ~ 36077299 (-) False LOC110496109
XM_036952637.1 mRNA downstream 115764 36071695 ~ 36076984 (-) False LOC110496109
XM_021571800.2 mRNA downstream 211800 35975293 ~ 35980948 (-) True LOC110496104
XM_036952629.1 mRNA downstream 221031 35918293 ~ 35971717 (-) True LOC110496103
XM_036952640.1 mRNA upstream 2290 36196135 ~ 36308398 (-) False ext1b
XM_021571815.2 mRNA upstream 142670 36336515 ~ 36453812 (-) False samd12
XM_021571816.2 mRNA upstream 142670 36336515 ~ 36461461 (-) True samd12
XM_036951040.1 mRNA upstream 270725 36464570 ~ 36465358 (-) True abrab
XM_021571818.2 mRNA upstream 304967 36498812 ~ 36560713 (-) False angpt1
TU1766170 other downstream 180062 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 688591 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 695766 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 843086 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 1012720 35175306 ~ 35180028 (-) True LOC110496081
TU1767721 other upstream 1107663 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 1728310 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 1953745 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 1953745 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 1971405 38165250 ~ 38214049 (-) True G1546053

Expression Profile