RNA id: TU1767512


Basic Information

Item Value
RNA id TU1767512
length 4675
lncRNA type read_through
GC content 0.42
exon number 3
gene id G1544600
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37018130 ~ 37022860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCCTCTGCTTTAatcaaatcaacaacaaaaaattaaatGTCAAATGCACCgaataccgtgaaatgcttacttacaaacccttaaccgaCAATGCAGTTAACGAAATACAGTGAAgaaaatatacaaataaaaaagtaacacattaaaataacaataatgaggctatatacagggggtaccggtaccgagtcagtgtgcaggggtacaggttagtcgaggtaatttgtacatgtaggtagggtgaagtgactatgcatagataataaacagcgagtagcagcagtgtaaaaacaaaaggaggtagaagctgttgagccttttggacctagacttggcgctccggtaccgcttgctgtgcggtagcagagagaacagtcaatgactttggtgactggagtctAAACAATTTTTgggggcattcctctgacaccacctagtacataggtcctggatggtagagTATGTTGCACTCTGTCCAACATCTCTTTTATGAACCAGGAAGTCCTGTCACAATCTGCCAATAAGACAAAACTTCCACCTCTTGTATGTGATTGGAGCTCTGATGGACAGACATGTTAACACTAGGTGGAAGCTAAGCTAAAGGGAATAACCTTCAATGTGTAAAGTGTTTTGGACTCGGAGGCCACCTTGCTACAGGGATTCGGGAGGGCCAAATGTCTGCTGACACTGTGTCATCTGGTGCTGTCATTGGCGCCATCCATTCTTTGTCTACGAACCTACTTAGATTTTCTATGACATTCAATTTTCTTTCATGAATACCAGGATGGAAGCAATAATCAGAAACATGCCAAAGGTAGACTTTCAAGTCAACAATTGACAACAAATGCACATTTTAAGGACATAGCTTGATTAGCATACTGCGCCCCATACATTATAGTTTTACCCATGGGCAATGATTGGTGTTCACCACATGAGGGCAACACTTTCAAAAGAGATATGTCAAACCAACATTTCTTTACCTGTAATTAAAAAATACCATTTTGGCCTGTGATGAATACCTCCGTTATAGGAGGCACACTCCCGCAGTCAGCCGTGAGTGACAAGTGAAAGAGATTCTCCGGTACTTTGGTATACTTATTAGCCAGTAGATGTGAATGTAGCAATCACGTGCCACAAGTGGTCCCCGAAATAGATGTCTCTGCTGCGTCCACTGAGCCATTGGGCCCGCCCTGTAATCTCATTGGATAACGCTGGGCAGGCcacttgctagctgtcactcaaatgcgCAGGGCGGCAACTCATTGGCTAGAACACTAATTTCTAGGGGGCTGGCCCACTTGGGGGGAAATTTAGAGAACATTGCACGGCACAGCTTTAAGAAAACAGTTTCTTTCAAATTAAggatttcgtggctaattgaggtaaaatgGTAATTccgctcatagattatgcatgtgtaaactacacattgacacatcagCCCAAAGCAGGatgtttaaaaaatacatttttaatcgCCAAAATACCGGAGATTGTACATCAGTAATGCCGGCAAAATGAATTATCTTATGGGAACTATACATCCCAGTGTGTTTAGCTACAGGAGTAGCCTGATTTTAACATCTCTTAGTGATTGATGCATTGCTATTAAAATGTAAGAACAAGCAAAGAGTGTGTGTGGATATTCGTGTTCTTCCTTAGACCGCAAAGCCTTCCTCCACCTTACCCTTCAGACAGCATAGAGGGGGGGAAAAAGTGACAAAAAATAAGTTGATTAGTCGTGTACACATTTTAGATGGCGTTTTAGCAGTGCAATGAAATTCTTCTGTTACtggctcctaacaatgcagtctAATGTCAAACAATTCTAATGTGAAAAAAAGAAAAGAGGAGAAAAGAACTGATGGACAAATCCAATGaacaacccaaatagcactgtagCAGTATCAAAATGCCATCTATACATATGTACACAAGGGGAATTTACACAAgagaaactacactgaacaaaaatataaacctcaagtgtaaagtgttggtcccatatttcatgagctaaaataaaagtttccagaaatgttccatccactcaaaaagcttatttctcttacaTTTTgtccacacatttgtttacatgagcatttttcctttgccaaaataatagacctacctgacaggtgtggcatatcaaaaagctgatttaaacagaatgatcattacacaggttcaccatGTGCTGGGaacagtaaaaggccactctaaaatgtgcagtttgtcacacaacacaatgccataaatgtctaaagttttgagggagtgtgcagtaggcatgctgactgcaggaatgtccaccagagctgttgccagagaatttaatgttaatttctctaccataagcagcctccaacatcattttagagaatttggcagtacgtccaaccggcctcacaaccgcagaccacatgtaaggagttgtgtgggtgagcggtttgtcAACGGCatgaacagagagccccatgattgcggtggggttatggtaaggttggggttatggtatgggcaggcttaagctacggacaacaaacacaattacattttgtcGATTAGCAatatgaatgcacagagataccgtgatgagatcctaaGGCCTACTGTCGtgacattcatccgccgccatcgccccatgtttcagcatgataatgcacaaccccatgtcgcaaggatctgtacacaattcagggaagctgaaaatgtcccagttcttccatggcccaatgagcatgtttgggatgtgaATGACGGCATGTTCTAGTTCCCGTcaatattcagcaacttcacacagccattgaagaggagtgggataacATTTCCCTGGCCACAGTCAACAACCTGATTAACTCTATGCGAAAGAAATGTCGTGCTGCATGAAGCAAATGATGGTCACAACAGATGGTTCTGGttctgatccacgtccctacttaaaaaaataataattatgatatatgtgaccaacagatgcatatctgtattcccagtcatgtgaaatccagagattagggcctaatttatttatttcaatgacTGAtatccttaaatgaactgtaactcagtaaaatcttaggtGGTGTTATAttcccgacaggatgctctcaatggtgcatctgtagaagttcatGAGTGTCTTAGGGGccatgccaaatttcttcagccacaGGAGGTTGTAGAGGCACTGTTGCACTTCCTCACCACAGTGCCGGTGTGGTGAGACCATTTCAGGtcatcagtgatgtgtacaccaaggaacttcaaCCTTTTGATCCTATCTACTGCGTCCCCGTCGATGACGATGCGGGCATGCTCCctcttctgtctcctgtagtccacaataagaTCCTTCCTTTTTATTGACGTTGAGGGACAGGTTATTTTCCTGGGACCACTCCGCCAGCACAGGTGtgtcagcatgtgtgtgtgtgaattcccAATTTCTCACGTTGGAGCAGATTATTGTGAGTTTGTGTTGATTTGACGTTTTAAAGGGCGACTGCACTTCTTGATTCTGCCTTATTTTAGATTTGGTTCTGTAAGAAATGCTAGCAGCCATGATTGAATTCAAACGGGAAGAGTGTGGTGTGAAGAGGTGTGAAGAGTTaaccaaatgattagccaagttAGCCTCAGCCGGCTGGTGTGCGACTGTGGCGAAGTTGACCTATTGGCCTTTTAAAATGTAGTCacatgtacattgtgtaatttcctgatggtccctaactagccccataggGATGTCAAACCAAATTGATCATGGGTATTACGATCAGGTCGCGTGCACTGCGCTCCGAACTGATGATTACTTGGGTGCTGCCGGCTGAGGGCATGTGGGCAGGATTGAAATAAACCCAACTCATAGGAAACTGTTATGTTCCCCTTCATTCCATAACATACAATCTTTTCCTATCATCTCACAAATCTTAGTTTTGGacaagactgactttatgaccaaaatgatcgTATTTACACATGAGACTAAACATTGACACTGGAATAAATATTTGACACAGGCCatttaagaatatatatatataaaaaaaaacgagAAGTTGCTTTTTAGGGGCAGTCGCTCTTTTAAAGCTGCATGTTCCAGCAGAGGTGCGGTGGTATGTGGTAGCTAAGCCCTTCTGTCTTCCCCGGGGCCAGGTGTTGTGATGAGTGGATCTTCCTGCTGAAACGGACAGATGGAGAAGTGCCATAGCACACTACCAAGAAAAACACTGGAAAGAAATTGGATAAAGAAGTAGTTTAGAAAAAGAAATTGGCTGCTACGCTGTTGTAGTGATGTGCTGTCAAATCTTTCCAAAATGGTAGTATGAAGTCAGGGAGGAGTTGTGAGGATAGATCAACTCCATTTAACTTAGGTAAACATTTGTTGTCAACTCATAAAAGGACTGCTGTTTAGTCTGGAACACATAGATAGGACACTTACGTCTGACTTGGCACCCCACTTGTCTCTAGTAGTTTGCATATAGAACACTTTATGTTGAACCTGTCTATTCGTACCTgtccctggagagagaccctACATGTTTGAACAGACCCAACACATTTTTGTTATGGACACGAAATCAAACGCTTCGTCTGATCGTAAGTCAGTGGTTCTCATGGTTCAGTGGGTTAGAGCAGGTGGTTTTTCTAACTATACCAGAGCTAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1767501 lncRNA downstream 49486 36968223 ~ 36968644 (-) True G1544592
TU1767289 lncRNA downstream 52129 36965677 ~ 36966001 (-) True G1544405
TU1767287 lncRNA downstream 52898 36964973 ~ 36965232 (-) True G1544403
TU1767260 lncRNA downstream 68297 36949586 ~ 36949833 (-) True G1544378
TU1767257 lncRNA downstream 70175 36947726 ~ 36947955 (-) True G1544375
TU1767511 lncRNA upstream 66264 37089124 ~ 37090104 (-) True prdm1b
TU1767673 lncRNA upstream 240582 37263442 ~ 37263860 (-) True G1544758
TU1767679 lncRNA upstream 244290 37267150 ~ 37267554 (-) True G1544764
TU1767711 lncRNA upstream 274363 37297223 ~ 37297532 (-) True G1544796
TU1767714 lncRNA upstream 275182 37298042 ~ 37298308 (-) True G1544799
XM_036952648.1 mRNA downstream 28453 36975586 ~ 36989677 (-) False zgc:101785
XM_021571827.2 mRNA downstream 30604 36974996 ~ 36987526 (-) False zgc:101785
XM_036952651.1 mRNA downstream 30604 36974996 ~ 36987526 (-) False zgc:101785
XM_036952650.1 mRNA downstream 30604 36975579 ~ 36987526 (-) False zgc:101785
XM_036952647.1 mRNA downstream 30604 36975587 ~ 36987526 (-) True zgc:101785
XM_021571830.2 mRNA upstream 54167 37077027 ~ 37085722 (-) False prdm1b
XM_021571829.2 mRNA upstream 54167 37077027 ~ 37090101 (-) False prdm1b
XM_036952652.1 mRNA upstream 54167 37077027 ~ 37090101 (-) False prdm1b
XM_036952653.1 mRNA upstream 54167 37077027 ~ 37090102 (-) False prdm1b
XM_036952659.1 mRNA upstream 715981 37738841 ~ 37744121 (-) True LOC110496131
TU1766170 other downstream 1005444 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 1513973 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 1521148 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 1668468 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 1838102 35175306 ~ 35180028 (-) True LOC110496081
TU1767721 other upstream 278648 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 899295 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 1124730 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 1124730 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 1142390 38165250 ~ 38214049 (-) True G1546053

Expression Profile