RNA id: TU1768086


Basic Information

Item Value
RNA id TU1768086
length 2059
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1545149
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38051108 ~ 38053166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatttaaatgattttactgagttacatttcatataaggaaataaattaattaggcaataatctatggatttcacatgactgggcaggggtgcagccatgggtggggggggggcatatgTGATCGGCAACCTCCAATTTCCAGATTTGCTTGGTTGTGTGGTTCATCATTATGGGTTCTTACACTTTCTCAGTTGCTCCCCTAGGTCATTTAGGAAGGTTTTAGTTTGACTTATGACTTTTGTTACACCCAGCTTTCATTTATGTACTCTGAGATTGTAATGGAAATGGCAAACATGAGCTTGTTGATTTTAATTTTATACTTGACAACTGAGTAGGCTGGGAACAGCCTCTAAGTTTGTAGAATGTGACTTTGGTGTATTGCTAAGATCAACTAGAATGTGTCATTTTCAAGTGTTAATCCACTGGGCTATTCTTGGGTGGGTGGACCGTTGTGGGACTGGGTTTGGGTCTATCTGGGTCATTCACAGCCTAGCTATTCATAAAGAGCACTTGGTCACTTCACTTGATACTATAGTGTGGCAACTACCATACACAAGaaggcactttctctttctctctcctgtaccTTGGAAAGACCTGTGACTCTGTCCAAAAATGGCAGCCTGTTCCCCCCCCTTTTGTAttttagggctgaccccatttagttgattgtttggtcgatagacCGTGTATGTTGACCAAGATTTCCTTGGTTGAGCAGCAGCAAAAAAAATAAGTCAATGgtgtacaagacacctgtctggTTCGTGCCTGTCTTCGTGGAcaaatccattgtggaggccctGTGGGGATGGCCATGTCCATCACTCTCAGACATGTTCTACTGATTGTGTACTGTTAAGgacaatggtgcaacactaaaataatatttttttaacatGCGCTTTCTCCCTCGTTTGCAAGCGGTCGCTGTCAGCGGTTTTGAAATATCAGTCCTCTGTtcatttaattttatttatttaaccttttatttaaccaggtaggccagttgagaacaagttctcatttgcaactgcaacctggccaagataaagcaaagtggTGCGACACacaaacaacagttacacatgaaataaacaaacgtacagtcaataacacatcagaaaagtctatatacagtgtgtgcaaatgttgaATTGCCACCTTTTCCCAGACCATGTTATGTGCATAATAGAAATGTTAAACGCATTGGTGTTGAGAGAAATGCAGCGGAGGCAGGTGACAAGAAAACAGCCCTTGACATATTTGTCTAGGAAAAGTGAGGAAATCCCAACTTAATTAATGTCTTTAATCAATAGCCTAAATGTGCCATATATATAAATTCTCTAAGCGGCCTCAAACGGTAGTATACGTGCGTGACAGATCatgcttctgttgcctgttttaTTAATAGCCTACTTATTCCCATGCAACCACGTGgaataaacaatttcacaaattcgGCTGTTTTTAGTCTTTGCTATATGCTGTAATAAAGGCGTTACACTTTTTGTTAGAACAGCCTCTGGTATTATTTATTTAGTGTGTACACTGTTCCAAATGATCAGAAAGGATGTATAATAACCCTCGATCTTGATATTATTATGATCATTATAATAAgtgatgtcattatcattagGCTTAGTATAACAGCCTTGTATAACCAACATTGAGCTGTAAGGCCTAAGAGCGcatcctgtttagtcttaatacTGTAATTTACTTGGGCCTGTATTTCAATATATATATCATTGTACGCCATTGTAGCGATAATTAATTTGTTCGTCATCACACAGCGTACGAGTCATTTGGATTTTAAATGCAATGAAgcattcaaaaaatatatatatataataataaagcAACCATTGAATAATTAGCCTAAACAGTAAATAAACTGCTCTATTTCTGCAATTGCATTCACAAATGCATGCGACTGTTTTTAGTCTTGCTGTAAAaggctttacaaaaaaatactttCTGGTATGCATATTTGGTTAGTGTTTATGTTTTTCCAAACGGTCAGAAATGTTTGAAATCTAACCGCAGCAGTTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768169 lncRNA upstream 25907 38024970 ~ 38025201 (+) True G1545229
TU1768144 lncRNA upstream 173221 37877647 ~ 37877887 (+) True G1545205
TU1768143 lncRNA upstream 173971 37876906 ~ 37877137 (+) True G1545204
TU1768142 lncRNA upstream 174406 37876484 ~ 37876702 (+) True G1545203
TU1768136 lncRNA upstream 189821 37861087 ~ 37861287 (+) True G1545197
TU1768077 lncRNA downstream 137 38053303 ~ 38057721 (+) True LOC110496149
TU1768182 lncRNA downstream 41796 38094962 ~ 38095210 (+) True G1545242
TU1768198 lncRNA downstream 68427 38121593 ~ 38132628 (+) True G1545258
TU1768203 lncRNA downstream 75013 38128179 ~ 38129018 (+) True G1545261
TU1768215 lncRNA downstream 92339 38145505 ~ 38145709 (+) True G1545272
XM_021571876.2 mRNA upstream 4379 38029298 ~ 38046729 (+) False LOC110496149
XM_021571873.2 mRNA upstream 30884 38008948 ~ 38020224 (+) False LOC110496147
XM_021571874.2 mRNA upstream 32731 38009031 ~ 38018377 (+) True LOC110496147
XM_021571875.2 mRNA upstream 42326 38005691 ~ 38008782 (+) True pithd1
XM_021571871.2 mRNA upstream 47119 37995963 ~ 38003989 (+) True LOC110496146
XM_036952670.1 mRNA downstream 11404 38064570 ~ 38087903 (+) False LOC110496152
XM_036952669.1 mRNA downstream 11405 38064571 ~ 38087903 (+) True LOC110496152
XM_021571881.2 mRNA downstream 45497 38098663 ~ 38107458 (+) False LOC110496153
XM_036952671.1 mRNA downstream 45497 38098663 ~ 38107458 (+) True LOC110496153
XM_021571891.2 mRNA downstream 100679 38153845 ~ 38159052 (+) False LOC110496156
TU1767350 other upstream 994621 37055983 ~ 37056487 (+) True G1544455
TU1766999 other upstream 1187925 36862923 ~ 36863183 (+) True G1544137
TU1766867 other upstream 1285875 36764294 ~ 36765233 (+) True G1544007
TU1765133 other upstream 1959502 36086776 ~ 36091606 (+) True LOC110496111
TU1765134 other upstream 1962751 36076661 ~ 36088357 (+) False LOC110496111
TU1768221 other downstream 140086 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other downstream 140086 38193252 ~ 38204455 (+) True LOC110496158
TU1768508 other downstream 621861 38675027 ~ 38676004 (+) True G1545533
TU1768490 other downstream 637272 38690438 ~ 38691269 (+) False LOC110496176
TU1769768 other downstream 1063322 39116488 ~ 39120019 (+) True G1546605

Expression Profile