RNA id: TU1769414


Basic Information

Item Value
RNA id TU1769414
length 1072
lncRNA type antisense_over
GC content 0.52
exon number 5
gene id G1546303
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38563954 ~ 38570730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCATGGCCTTTGACCTCTGTGATCCGTTCTGGTTGTGGGCCTCACAGAGGTAGAGCCCGCTGTCCGCTTTGCTGACCAGGAGGACTAGTGTCTGCCCATTGGCCTTCCAGGTCTCCTTCCCACTGATGTCTTTGTACCAGGTGTAGCTCTCCACCGGTGGGTTGGCATCACTCTGGCAGGTCAGGGTCACTGCCCTACCCTCAGGCACAGGCCCTGTTGGGTTGGACAGGACTACAGTGTTTTTAGGGGCATACAGAACATTGAGGGTCAGGTTCCCCTGAGTCGTCTTGGTGGTGCCCCCTGGCTGCAGTGTGTAGCAGGCGGCGCATTTGACCATCAGCCCATGATGCCGGAGGGAGGCGGTAAATGTCAGGATGGAGGTCATGGTCATGAGCCCATCTATACCCTCCTGTAGCCGGCTCTCAACACTTCCACCCAGCCTAGAGGTCCAGGTCAGGGAGGGCGGCAATGTAGGGCAGGGGGCGGGGGCAGAGCAGCTCAGTCTAGCCCACTCCCCCTCCATGATGTTGCCCATAGAGATCAGTTggggtctgggtggggtgtCTGTATGATTGATATTTACACCTGGTAGAAAGTTATACTTGAGGTGATTTGTTCCAGCACATTCCAGCCTAAAGATATATGTGTCATCATATCCTGCAGAGAAACTGTTGAAAATAGTGGTGCAGTTCTTGTTCAACAGAGTTCCTAACATCACTCCCTTGATGATGTTCTTGGCATCCGTTTGGGCTGAGTGGAAAACAATATTTCCCCATTCTGAATGTTTCTTCCAAAGCCCATGGGGTGTGCAGTTGTTCAAGGTAGCATCAAACTCTGCAGGGATCTGGAATCTACATGGGACCATTAGGCAGGATCCACCAACAGCCACAATGCTTTGGGGCGTCCACAGACTCCACTGTTGGCAGAGAGCACCTTTCAACAGAAAAATGGTGAACGCAATTAACCACAGACCCATCTCTGATGTTGTTGAGATTGCCTTCCACAGTAACAATACACTGTGACTGAGTAATGGAGATCATGGATATTGAGATCACAGATATATCCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769400 lncRNA downstream 12310 38551397 ~ 38551644 (-) True G1546291
TU1769266 lncRNA downstream 22678 38478939 ~ 38541276 (-) True LOC110496166
TU1769356 lncRNA downstream 35430 38522603 ~ 38528524 (-) True zn706
TU1769352 lncRNA downstream 45149 38518382 ~ 38518805 (-) True LOC118940976
TU1769357 lncRNA downstream 52337 38496929 ~ 38511617 (-) True G1546250
TU1769421 lncRNA upstream 5402 38576132 ~ 38576346 (-) True G1546308
TU1769425 lncRNA upstream 9447 38580177 ~ 38580474 (-) True G1546312
TU1769426 lncRNA upstream 10856 38581586 ~ 38581888 (-) True G1546313
TU1769429 lncRNA upstream 14219 38584949 ~ 38585149 (-) True G1546316
TU1769443 lncRNA upstream 33670 38604400 ~ 38604663 (-) True G1546330
XM_021571912.2 mRNA downstream 589 38557052 ~ 38563365 (-) False LOC110496167
XM_021571911.2 mRNA downstream 10022 38541066 ~ 38553932 (-) False LOC110496166
NM_001160599.1 mRNA downstream 35446 38522608 ~ 38528508 (-) False zn706
XM_036951043.1 mRNA downstream 44165 38517903 ~ 38519789 (-) False LOC118940976
XM_021571909.2 mRNA downstream 45880 38516015 ~ 38518074 (-) True LOC110496165
XM_021571915.2 mRNA upstream 40723 38611453 ~ 38617573 (-) True LOC110496170
XM_021571922.2 mRNA upstream 77630 38648360 ~ 38665437 (-) False LOC110496173
XM_036952707.1 mRNA upstream 77630 38648360 ~ 38665538 (-) True LOC110496173
XM_036952708.1 mRNA upstream 103648 38674378 ~ 38675377 (-) False LOC110496175
XM_021571929.2 mRNA upstream 393357 38964087 ~ 38972431 (-) True LOC110496183
TU1769405 other downstream 636 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 349905 38165250 ~ 38214049 (-) True G1546053
TU1769081 other downstream 411722 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other downstream 411722 38147590 ~ 38152232 (-) True LOC110496154
TU1768955 other downstream 640620 37922155 ~ 37923334 (-) True ppt1
TU1769487 other upstream 103711 38674441 ~ 38676029 (-) True LOC110496175
TU1769511 other upstream 197367 38768097 ~ 38773684 (-) True G1546385
TU1769526 other upstream 205554 38776284 ~ 38787801 (-) True G1546396
TU1770682 other upstream 1055045 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 1072125 39642855 ~ 39646533 (-) False LOC110496816

Expression Profile