RNA id: TU1769426



Basic Information


Item Value
RNA id TU1769426
length 303
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1546313
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38581586 ~ 38581888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTAAATTTCATACATTTAGCCATAGAGTTAAAAAGAGTTACCTGAGAGGTAACCATTTCCTGTTCAGTCATTTCATGGAAAAATGCATGTCACTTGCACTGTCAAAAAGTTATCTCTGACTCAGTTTTTATACAGATTTTCATCTGTGTCAGATACCACTAAACGGAAGTTTGATGTAGCATTGGGCTGACCTAACCATGTACTTGACAATTTCCTTAGAAATTCTGCACACCTTGTTGCTTGTAAGTGCATTGCTTTGTCTACGTACAGTGGATCAGTATTCTGGAAACCTAGCATTATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1769425 lncRNA downstream 1112 38580177 ~ 38580474 (-) True G1546312
TU1769421 lncRNA downstream 5240 38576132 ~ 38576346 (-) True G1546308
TU1769414 lncRNA downstream 10856 38563954 ~ 38570730 (-) True G1546303
TU1769400 lncRNA downstream 29942 38551397 ~ 38551644 (-) True G1546291
TU1769356 lncRNA downstream 53062 38522603 ~ 38528524 (-) True zn706
TU1769429 lncRNA upstream 3061 38584949 ~ 38585149 (-) True G1546316
TU1769443 lncRNA upstream 22512 38604400 ~ 38604663 (-) True G1546330
TU1769444 lncRNA upstream 23042 38604930 ~ 38605195 (-) True G1546331
TU1769499 lncRNA upstream 107873 38689761 ~ 38689983 (-) True G1546376
TU1769502 lncRNA upstream 109649 38691537 ~ 38691777 (-) True G1546379
XM_021571912.2 mRNA downstream 18221 38557052 ~ 38563365 (-) False LOC110496167
XM_021571911.2 mRNA downstream 27654 38541066 ~ 38553932 (-) False LOC110496166
NM_001160599.1 mRNA downstream 53078 38522608 ~ 38528508 (-) False zn706
XM_036951043.1 mRNA downstream 61797 38517903 ~ 38519789 (-) False LOC118940976
XM_021571909.2 mRNA downstream 63512 38516015 ~ 38518074 (-) True LOC110496165
XM_021571915.2 mRNA upstream 29565 38611453 ~ 38617573 (-) True LOC110496170
XM_021571922.2 mRNA upstream 66472 38648360 ~ 38665437 (-) False LOC110496173
XM_036952707.1 mRNA upstream 66472 38648360 ~ 38665538 (-) True LOC110496173
XM_036952708.1 mRNA upstream 92490 38674378 ~ 38675377 (-) False LOC110496175
XM_021571929.2 mRNA upstream 382199 38964087 ~ 38972431 (-) True LOC110496183
TU1769405 other downstream 18268 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 367537 38165250 ~ 38214049 (-) True G1546053
TU1769081 other downstream 429354 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other downstream 429354 38147590 ~ 38152232 (-) True LOC110496154
TU1768955 other downstream 658252 37922155 ~ 37923334 (-) True ppt1
TU1769487 other upstream 92553 38674441 ~ 38676029 (-) True LOC110496175
TU1769511 other upstream 186209 38768097 ~ 38773684 (-) True G1546385
TU1769526 other upstream 194396 38776284 ~ 38787801 (-) True G1546396
TU1770682 other upstream 1043887 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 1060967 39642855 ~ 39646533 (-) False LOC110496816

Expression Profile