RNA id: TU1768512


Basic Information

Item Value
RNA id TU1768512
length 292
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1545537
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38687260 ~ 38687551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaacgtctaggagcaacaacagctcattcacaaagtggtaggccacacaagctcatagaatggGACCTCCGAGGGTGCTGAAgagcgtaaaaatcatctgtcctggGTTGCATCACTCATTAccgaattccaaactgcctctgcagcacaataactgttccttCACGAAATGGCTGAGGATCcgctaagatcaccatgcgcaatgccaagcgtcggctgatgtggtgtaaagcttgccaccattggactctggagcagaatTGTTTGGTGCTGGAgaaataatgatctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768483 lncRNA upstream 2153 38682663 ~ 38685107 (+) True G1545508
TU1768487 lncRNA upstream 7225 38678237 ~ 38680035 (+) False LOC110496176
TU1768451 lncRNA upstream 81767 38605268 ~ 38605493 (+) True G1545493
TU1768220 lncRNA upstream 163427 38522599 ~ 38523833 (+) True G1545276
TU1768393 lncRNA upstream 170328 38502789 ~ 38516932 (+) True G1545436
TU1768478 lncRNA downstream 5985 38693536 ~ 38695903 (+) False LOC110496176
TU1768479 lncRNA downstream 7311 38694862 ~ 38696088 (+) True LOC110496176
TU1768482 lncRNA downstream 29005 38716556 ~ 38720192 (+) True LOC110496812
TU1768538 lncRNA downstream 65013 38752564 ~ 38752793 (+) True G1545558
TU1768550 lncRNA downstream 106939 38794490 ~ 38794949 (+) True G1545570
XM_021571921.2 mRNA upstream 41635 38632507 ~ 38645625 (+) True LOC110496172
XM_021571916.2 mRNA upstream 55566 38617802 ~ 38631694 (+) False LOC110496171
XM_021571917.2 mRNA upstream 55566 38617951 ~ 38631694 (+) True LOC110496171
XM_021571919.2 mRNA upstream 58702 38617802 ~ 38628558 (+) False LOC110496171
XM_021571913.2 mRNA upstream 89902 38593275 ~ 38597358 (+) True si:ch211-171h4.3
XM_036952711.1 mRNA downstream 9570 38697121 ~ 38713314 (+) False cnot3b
XM_036952712.1 mRNA downstream 9570 38697121 ~ 38713314 (+) False cnot3b
XM_036952713.1 mRNA downstream 9570 38697121 ~ 38713314 (+) False cnot3b
XM_036952714.1 mRNA downstream 16903 38704454 ~ 38713314 (+) True cnot3b
XM_036952715.1 mRNA downstream 28934 38716485 ~ 38730617 (+) False LOC110496812
TU1768508 other upstream 11256 38675027 ~ 38676004 (+) True G1545533
TU1768221 other upstream 482805 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other upstream 482805 38193252 ~ 38204455 (+) True LOC110496158
TU1767350 other upstream 1630773 37055983 ~ 37056487 (+) True G1544455
TU1766999 other upstream 1824077 36862923 ~ 36863183 (+) True G1544137
TU1768490 other downstream 2887 38690438 ~ 38691269 (+) False LOC110496176
TU1769768 other downstream 428937 39116488 ~ 39120019 (+) True G1546605
TU1769824 other downstream 445568 39133119 ~ 39146252 (+) True G1546641
TU1769903 other downstream 670860 39358411 ~ 39372481 (+) False G1546713
TU1770013 other downstream 779903 39467454 ~ 39469365 (+) True G1546817

Expression Profile