RNA id: TU1769701


Basic Information

Item Value
RNA id TU1769701
length 3061
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G1546550
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39050510 ~ 39053620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttcacacacagacacagtacattgattgattaaacCAAGTAAGATGCTGACTTTGTATTTGCCAAGGATAGTATCTGTACAGAAGATAtcaaaggttgtgtgtttgttAGATGTGTGATGTTTTATTTAACAACAGTATATTCATATATACAAACACAAGTGAAACAAACACACGTGACATATAGGGCTGTATGGTTGTTGTTAGTTTGTTGTAATTTTTCATTATGTCTCATAGGGCATTTCAAAGCCAGATTTATACTGCTTGtgtgatacatttttttcaatACAGGAAAATGACAAAATGGATTCAGTAGTGTGCTTTTCTACACTTCACGTGATCTCGATATTTATGAATTAGACCATATTTTTCAATTCAATATCAATGTTGATTATTTCATCATTTTAATTGTTTATGGCTGGGCTATAGACCTTGCTTAAATGCCTCTTTGTTTGGTGCCTCGTGGAGAATAAGAGTACAAGACTTTGGAAGCAGGAAGAacgtgttcacacacacacacacacacacacacacacacacacatacagtacacattagCTGAAGAAGAGGCACAAATAAGCAGCAGAAACAAGGAACTCACAAACACAATCACCCAAAGTAAACGGAAGGCCATGAAACACAGGCCAGGAACAAAAATAAACATCAAAGCAATACCAACTGCATTGGTAAAAATCCATTTCAAAACAACATGCTTTTCTGATGTAAAATGGAATAGATTTCTATGACAATATAGGATACAATGATCATCAACTcataaatacacttttttttagGCACACACTGGGGACAGCATAAGGTGGATACTGAACAAGTGGAAGGCATGTggaaagtggaagagagagggagagtgagggaagcAGTGTTGTGGAGCAGTGGTAAGggaattgttttttttaattatcCAGTGTCCATTTTGACATAAATAATACTTTAACACAAAGTTAATAGAGTAATGTATGTCAATGCTTCAGTGTATTAATAGGAAACAATCCAATActtgttctctctttccttctctttttcaCTCATTGGACGATGGGCACCCCATAAGCCAGAACAAGCCCACATTCAACCACTGCAGTcaacatataaatataattttgaaaatacatatttacaAATAAATTCTCTCCTAACTTTTTACAATAAGTGAATGTGCATAAGGTAACTGAGTATGGTTCAGTTAGTAAAGTACCACAGTCTTGTTAACAGTAGTGAGGGAGGGCTGCCATTGAAGAACGTTTTTTCCTTGGAGGAGAGGTCAAATACTGAATACTACCATCAAAGGAATGTATTTTCCCAGTGCAACACATACACATATCCACAATATGTTATATAAATAAAGAACAAAGCCATGACCCTGTCATCTTTCTAGGCAAAATAAATTGTGAAAGTGCTTGGAGAAAAATAACTACGTCTAATTTACACAACCACAAAAAAAAagtaatattttttttgtaacacacatatatatatatatatatatatctatactacagtatatctatacaATAAAATATTTTAATAAATTTCGATTTTTAACAACATTCCACAAGGTTAATCTTCAGACAAAGTGTCACAAAGTAGAGTATAGACTTAAAGGGGAGTCATTAAAAAGCATTGTGCACAAATGCTCACATTTGGTCACAACTAAAGTCCCATTGTGTTATTCCAAATACAGACTGAATAGATAACCTTCATAATCATATTCAACATTTTTGACTGAATGCTCTCACAGCAGAACAATTCAAAATTACACTCAATTCCACAGAGAAAACCGATGGAGTCCTTTGCTCTCTATGGTTGATTCTTATCGAATCCAAGTTCATAACATCGCGACTCATATCACAATCTATTATAATCTAATATCCAAAATAACTATCTGTCCCCTTAGACAGTATAGTTAATGCAATTCTACTCCCTCAGGTAAATATTTCTCTAATTATTCTTTATGTTGATTCATTTGCCATAAATCGCTTTTTGAAGAGTATATTAGcaatcttggaattttaattgatttCTATTCTATTAGTTAATAATTTGGTTAATAAGGTGCACCTAAAGCAAGTTAAAGTGAAAGAAgtaccatatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttatttatgcCATCTGAATGTAATTTTTAGCAGTGGATTCTTATGTTGAGTAGGGTATTAGCACATTATTTTGTTCTCAAATACAACAACTGTTGAAATTAAATGTCAAGTACGATCATTCTGGGATTATTGGGTTATTTAAAAAAGCTATTTCTAAAACCATGAAAACCAACTAATGCAATTGACCCTAATCTACTGTTTCACTGTTAAAACTATTGTAAACTATTGTTTACCAGAAACACTATTGAGGTTGTTTGCTTTGACTAGACCCACTTTGGCTTTACTAAAAGCTGTTTAAATGATGATGCACTCAGGAAAAGAAGGCAACAAAattaaaatacacattttgaCCTATAGGTCGAGAAATATATTACACATGACAGAaagaaatgtgaaaaaataaCACTAATTCATTCTAGCTACTGTATCCACCCAAAAATGTGTGTTGTGGCTTTCCATGTACACGAACGGTATATTTCCCTTCACGTCAAACACTCGTCCCCATGTACCTGAACTGCCAAAGAATTAAGCTTTGATCTGTTTTTGAACCAGCTGACCCCCAACCCTTGACCTTTAAGCATTGACCCAACACAGGATTCTACAAGCTCTCCTGTACAATTGAGTTGGACCTATCCTCTGCTGCTGCCGCCTCCACCAATGGAACCTTCTCCTTGATGGGCGAGGCAGGAAGTGTTACGCTGATACTAGTGGGAGGAGCTCCCACAGAGGTGGCAGGGGGCAGGGTGGCCCCGCCAAACTCACGGGCGATCTCGTCAAAGGTCTTGCCCTTGGTCTCTGGGACTTTGATGAAGgtgaagatgaagaagaagatgagTAAGATCATGAAGATGATAAAGACGTAAGGCCCACACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769731 lncRNA downstream 10583 39030040 ~ 39039927 (-) True G1546577
TU1769622 lncRNA downstream 114788 38932176 ~ 38935722 (-) True G1546480
TU1769663 lncRNA downstream 122636 38925113 ~ 38927874 (-) True G1546516
TU1769592 lncRNA downstream 230294 38819856 ~ 38820216 (-) True G1546451
TU1769587 lncRNA downstream 240161 38810081 ~ 38810349 (-) True G1546446
TU1770135 lncRNA upstream 64134 39117754 ~ 39187626 (-) True G1546924
TU1770143 lncRNA upstream 178070 39231690 ~ 39232195 (-) True G1546932
TU1770144 lncRNA upstream 178939 39232559 ~ 39233080 (-) True G1546933
TU1770163 lncRNA upstream 184034 39237654 ~ 39238045 (-) True LOC110496197
TU1770254 lncRNA upstream 209301 39262921 ~ 39263179 (-) True G1547038
XM_021571929.2 mRNA downstream 78079 38964087 ~ 38972431 (-) True LOC110496183
XM_036952708.1 mRNA downstream 375133 38674378 ~ 38675377 (-) False LOC110496175
XM_036952707.1 mRNA downstream 384972 38648360 ~ 38665538 (-) True LOC110496173
XM_021571922.2 mRNA downstream 385073 38648360 ~ 38665437 (-) False LOC110496173
XM_021571915.2 mRNA downstream 432937 38611453 ~ 38617573 (-) True LOC110496170
XM_021571934.2 mRNA upstream 13244 39066864 ~ 39081723 (-) True LOC110496188
XM_021571942.2 mRNA upstream 62971 39116591 ~ 39133147 (-) False LOC110496190
XM_036952727.1 mRNA upstream 62971 39116591 ~ 39134268 (-) False LOC110496190
XM_021571944.2 mRNA upstream 62971 39116591 ~ 39145939 (-) False LOC110496190
XM_036952728.1 mRNA upstream 62971 39116591 ~ 39145939 (-) False LOC110496190
TU1769526 other downstream 262709 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 276826 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 374481 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 487192 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 836461 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 572155 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 589235 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 589235 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 631167 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 1332350 40385970 ~ 40391883 (-) True G1548367

Expression Profile