RNA id: TU1769903


Basic Information

Item Value
RNA id TU1769903
length 1332
RNA type TUCP
GC content 0.52
exon number 7
gene id G1546713
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39358411 ~ 39372481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAACCATTTATTCAAGTAGTCTTCAGCCTTGTGGGTTTGTCTTGACAGTCTTTTGCTGGAAAAAGTTATTGACATGTGCTTCAACCAATAGGAGAGAAAGGGCAGGACTAAACCAAGCGCGTGCATGACTGTGCTTCTAGTGACTAATGCAACTTGTACAGTCACTAGCAATACACTAAGTACTGGTCCCTCTACAGTTGTGAGTGAACACATATCCAGTGTGGAACATCAAGTGCAGTGCTTATTAATATatcagaaaaatatattttagaatgtaTACTGATATAGCAGTTGTTAGGAACTTGCATCCAAAGGGCCGTTCCAATGTAAAAAGTCCCACCCTTAACACATAGAATACCATCTGCATCAACCAATGGAGTGGTGGCGGGCCCCACTGTGGCGGGCCCCTAAACTACAGTGTAGTACAAAGTGAGTCAAATAGTCCCTTCTTGACAGACACaaaaacacaggtaagacattgTCACACAGAGACTCTGGGAAGAGGGACAGTCACAGGACACTACTAGCAGCAGGTTAGGTTGCTCTTGTGCGCTCTAGGCACGCGCGTTGATGATGTCAACAAACTCTGGCTTGAGGGAGGCTCCGCCAACCAGGAAGCCGTCCACGTCATTTTGGGAGCCCAGCTCTTTGCAGTTGGCCCTGATCCACTCCCTCAGTTTCTCATGCACCTCCTGGGCCTGCTCGGGTGAGGCCGTCTTGCCGGTACCGATGGCCCACACAGGCTCATAAGCCAGCACCACTTTGCTCCAGTCCTTCACGTTGTCTGCGATGGCCTGGGTCTGGGCGTACACCACCTCCTCTGTGGTTCcagcctccctctcctccagcttCTCTCCGATGCAGGCGATCACCCCCAGGTCACTCTCCAGGGCGTGGGCCACCTTCTGACCAATCAGCTCGTCGCTCTCCCCGAACACATGACGCCTCTCCGAGTGGCCCAGAATCACCCACTCCACGCCACAGTCCTTTATCATCGCAGGGCTGATCTCGCCAGTGAAAGCCCCCTTGGCGACTTTGTAGCAGTTCTGTGCAGCCACACCGATCCTGGCATCCAGGTTCGAGCGGGCAAAGTCGAGGTAGACGGTGGGAGCGCCACACACCACCTCGGTTTCATCGTGGAGGCTTGCGGTGTTCAGGGTCGTTATGAGGTCGCCCAGGCTTTTCTTGTCACCGTTCATCTTCCAGTTTCCTCCTACGAAAAATGTTCTGGACGACATGATGGCTGGGCGGTAGATGATACTAGAAAAACGATGACACGATACGAACAGCGGGCAAACAGAAGcggtctttttcttcttctttgggattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769907 lncRNA upstream 67428 39290182 ~ 39290983 (+) True G1546717
TU1769892 lncRNA upstream 97620 39260272 ~ 39260791 (+) True G1546707
TU1769857 lncRNA upstream 126205 39231698 ~ 39232206 (+) True G1546672
TU1768685 lncRNA upstream 338251 39014889 ~ 39020160 (+) True G1545688
TU1768664 lncRNA upstream 392573 38960505 ~ 38965838 (+) True G1545667
TU1769950 lncRNA downstream 2200 39374681 ~ 39384881 (+) True G1546759
TU1769960 lncRNA downstream 13990 39386471 ~ 39386732 (+) True G1546769
TU1769961 lncRNA downstream 14388 39386869 ~ 39387101 (+) True G1546770
TU1769963 lncRNA downstream 16208 39388689 ~ 39389005 (+) True G1546772
TU1769966 lncRNA downstream 16859 39389340 ~ 39401169 (+) False G1546774
XM_021571960.2 mRNA upstream 1287 39326837 ~ 39357124 (+) False LOC110496201
XM_021571964.2 mRNA upstream 1287 39326959 ~ 39357124 (+) False LOC110496201
XM_021571962.2 mRNA upstream 1287 39337594 ~ 39357124 (+) False LOC110496201
XM_021571961.2 mRNA upstream 1287 39338736 ~ 39357124 (+) True LOC110496201
XM_021571954.2 mRNA upstream 128490 39221315 ~ 39229921 (+) True LOC110496196
XM_036951045.1 mRNA downstream 213389 39585870 ~ 39586862 (+) True LOC118940977
XM_036952764.1 mRNA downstream 247238 39619719 ~ 39622185 (+) False LOC118941156
XM_036952763.1 mRNA downstream 247246 39619727 ~ 39622185 (+) True LOC118941156
XM_021571988.2 mRNA downstream 692779 40065260 ~ 40077268 (+) False LOC110496217
XM_036952776.1 mRNA downstream 723347 40095828 ~ 40101459 (+) False kifc1
TU1769824 other upstream 212159 39133119 ~ 39146252 (+) True G1546641
TU1769768 other upstream 238392 39116488 ~ 39120019 (+) True G1546605
TU1768490 other upstream 667142 38690438 ~ 38691269 (+) False LOC110496176
TU1768508 other upstream 682407 38675027 ~ 38676004 (+) True G1545533
TU1768221 other upstream 1153956 38193252 ~ 38204455 (+) False LOC110496158
TU1770013 other downstream 94973 39467454 ~ 39469365 (+) True G1546817
TU1770566 other downstream 388732 39761213 ~ 39761503 (+) True G1547334
TU1770924 other downstream 663036 40035517 ~ 40040594 (+) True G1547652
TU1771006 other downstream 733514 40105995 ~ 40106776 (+) False LOC110496221
TU1771007 other downstream 733797 40106278 ~ 40106846 (+) True LOC110496221

Expression Profile