RNA id: TU1769969


Basic Information

Item Value
RNA id TU1769969
length 2242
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G1546774
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39389340 ~ 39409153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttcttcttctatgaATCTAAATAACATGACCGTTGATTGACAGACATTGCTTTAGAAGGATTTTGAACTGTGGTGACCACTTCAATGACACAACAGTAACTATATAAGATCCTCCTGGAGTAAAAGTTTAATTGAAAAAGCAAATGAAAGTAGATACTATTAAAGTAAAGCATTGCTCTTCAGACCTGATAATGCTGTAAAAGTCAACGACAGGGGTGGCCAACCATCTTCCTGAAGAGCTACCGGTCTTGCTCTTTCCCTGCTCTAatacacctgattctactaatcaGCGGCTCATCCGAACCTTGGTTAGCTGAAACAGATGTGTTAGAgcagggttggagcaaaaacctgaATACCCAGTAGCTCTGCAGGTGAAGTGTTGGTCATCACTGGTCTATCACTATGGACGTTGACAGGGAGGAATTCTGGGTCCAACACGAGTCTGGTAAGTGCTTATCTCTAAGTAGCAGGTGCATAGGCCTACATCTCGATCTCACAGATGAAGGGCCAGTACATGGTGCACGGGGCGTCGTACCAGCTGCTCACCGCCTTGCGCTCCAGCTTGCGAGTCTTCACGATGTAGCCACAGTCTTCGTCAATGTGGTTGTTGGGCTCGCCTTCCTCCCAAAAGCCCGACCAATTTGGTTCCATCGACCCAAAGCCAGTCTGCCTCAGCCGTCTCGTCACTGATTCCAAACCAGTAGGCATTCCAGTGGCCCCGAGGTAACTGGTTCCACAGAAACGTCTATAGCAGGAGACATGATTACATTGGGATGTGACAATGTCTATAGCAGCAGACATGATTACATTGGAATGTGACAATGTCTACAGCAGGAGAAATGATTACATTGGGATGTGAATGATGACGTTGATAACAGGAGACAAGATTACATTGGGATGTGAATTATGACGTTGATAACAGGAGACATGATTACATTGGAATGTGACAATGTCTACAGCAGGAGAAATGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGAATGTGAATGATGACGTCTGTAACAGGAGACAAGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTGTAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTATAACAGGAGACATGATTACATTGGAATGTGAATGATGACGTCTGTAACAGGAGACAAGATTACATTGGGATGTGAATGATGACGTCTGTAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTATAACAGGAGACATGATTACATTGGAATGTGAATGATGACGTCTGTAACAGGAGACAAGATTACATTGGGATGTGAATGATGACGTCTGTAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTATAACAGGAGACATGATTACATTGGAATGTGAATGATGACGTCTGTAACAGGAGACAAGATTACATTGGGATGTGAATGATGACGTCTGTAACAGGAGACACGATTACATTGGGATGTGAATGATGACGTCTATAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACAAGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTACATTGGGATGTGAATGATGACGTCTACAACAGGAGACATGATTAAAGAACATTCCCTCAATTACTCCATTCTACCAGGAGAAATTGGTTTAGACTAATTATCATGAACCCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769963 lncRNA upstream 335 39388689 ~ 39389005 (+) True G1546772
TU1769961 lncRNA upstream 2239 39386869 ~ 39387101 (+) True G1546770
TU1769960 lncRNA upstream 2608 39386471 ~ 39386732 (+) True G1546769
TU1769950 lncRNA upstream 4459 39374681 ~ 39384881 (+) True G1546759
TU1769902 lncRNA upstream 16859 39372060 ~ 39372481 (+) True G1546713
TU1769968 lncRNA downstream 203 39400881 ~ 39409153 (+) True G1546774
TU1769988 lncRNA downstream 33139 39433817 ~ 39437022 (+) True G1546793
TU1770003 lncRNA downstream 53061 39453739 ~ 39454003 (+) True G1546808
TU1770009 lncRNA downstream 59691 39460369 ~ 39464012 (+) True G1546813
TU1770011 lncRNA downstream 65168 39465846 ~ 39466414 (+) True G1546815
XM_021571960.2 mRNA upstream 32216 39326837 ~ 39357124 (+) False LOC110496201
XM_021571964.2 mRNA upstream 32216 39326959 ~ 39357124 (+) False LOC110496201
XM_021571962.2 mRNA upstream 32216 39337594 ~ 39357124 (+) False LOC110496201
XM_021571961.2 mRNA upstream 32216 39338736 ~ 39357124 (+) True LOC110496201
XM_021571954.2 mRNA upstream 159419 39221315 ~ 39229921 (+) True LOC110496196
XM_036951045.1 mRNA downstream 185192 39585870 ~ 39586862 (+) True LOC118940977
XM_036952764.1 mRNA downstream 219041 39619719 ~ 39622185 (+) False LOC118941156
XM_036952763.1 mRNA downstream 219049 39619727 ~ 39622185 (+) True LOC118941156
XM_021571988.2 mRNA downstream 664582 40065260 ~ 40077268 (+) False LOC110496217
XM_036952776.1 mRNA downstream 695150 40095828 ~ 40101459 (+) False kifc1
TU1769903 other upstream 16859 39358411 ~ 39372481 (+) False G1546713
TU1769824 other upstream 243088 39133119 ~ 39146252 (+) True G1546641
TU1769768 other upstream 269321 39116488 ~ 39120019 (+) True G1546605
TU1768490 other upstream 698071 38690438 ~ 38691269 (+) False LOC110496176
TU1768508 other upstream 713336 38675027 ~ 38676004 (+) True G1545533
TU1770013 other downstream 66776 39467454 ~ 39469365 (+) True G1546817
TU1770566 other downstream 360535 39761213 ~ 39761503 (+) True G1547334
TU1770924 other downstream 634839 40035517 ~ 40040594 (+) True G1547652
TU1771006 other downstream 705317 40105995 ~ 40106776 (+) False LOC110496221
TU1771007 other downstream 705600 40106278 ~ 40106846 (+) True LOC110496221

Expression Profile