RNA id: TU1770421


Basic Information

Item Value
RNA id TU1770421
length 222
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1547195
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39566685 ~ 39566906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catccatgtatttatatgtacgtattctcattcatccctttacatttgtgtgtataaggtagttgttgtggaattgttagattacttgttggttattactacattgtcgtaactagaagcacaagcattttgctacacttgcattaacatctgctaaccatgtgtatgtgaccaatacaatgtgatttgattttgtaCTGTGCGCGTATGTTACTAtatgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770363 lncRNA downstream 113 39560562 ~ 39566572 (-) True LOC110496815
TU1770396 lncRNA downstream 35798 39530483 ~ 39530887 (-) False G1547172
TU1770397 lncRNA downstream 35798 39530483 ~ 39530887 (-) False G1547172
TU1770398 lncRNA downstream 35798 39530483 ~ 39530887 (-) True G1547172
TU1770351 lncRNA downstream 112501 39453904 ~ 39454184 (-) True G1547132
TU1770427 lncRNA upstream 2193 39569099 ~ 39569473 (-) True G1547201
TU1770691 lncRNA upstream 24187 39591093 ~ 39591317 (-) True G1547440
TU1770692 lncRNA upstream 25486 39592392 ~ 39592704 (-) True G1547441
TU1770693 lncRNA upstream 27402 39594308 ~ 39594747 (-) True G1547442
TU1770705 lncRNA upstream 43028 39609934 ~ 39610286 (-) False G1547454
XM_036952757.1 mRNA downstream 194 39467426 ~ 39566491 (-) False LOC110496815
XM_036952752.1 mRNA downstream 195 39467426 ~ 39566490 (-) False LOC110496815
XM_036952753.1 mRNA downstream 195 39467426 ~ 39566490 (-) False LOC110496815
XM_036952756.1 mRNA downstream 195 39467426 ~ 39566490 (-) False LOC110496815
XM_036952758.1 mRNA downstream 195 39467426 ~ 39566490 (-) False LOC110496815
XM_036952760.1 mRNA upstream 47764 39614670 ~ 39616834 (-) False LOC110496207
XM_036952759.1 mRNA upstream 47764 39614670 ~ 39616835 (-) False LOC110496207
XM_036952761.1 mRNA upstream 47764 39614670 ~ 39616836 (-) False LOC110496207
XM_036952762.1 mRNA upstream 47764 39614670 ~ 39616840 (-) True LOC110496207
XM_021571977.2 mRNA upstream 58865 39625771 ~ 39641801 (-) False LOC110496208
TU1769526 other downstream 778884 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 793001 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 890656 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 1003367 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1352636 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 58869 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 75949 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 75949 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 117881 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 819064 40385970 ~ 40391883 (-) True G1548367

Expression Profile